SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18471

Length: 1643 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18471

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1635 domain containing protein	-	-	5.0e-24	55%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	40%
Blast2go	conserved hypothetical protein [Ricinus communis]	-	-	3.36391e-18	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1635	IPR012862	-	3.36391e-18	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SYP8

Fln msg:

Fln protein: MQSTMLSPLTPWLYQGQSPEELKHLLFCTTLELETTRLGAKDEVKRHEENVRQLLNIIHVTCRERDEAREQCQKLQEKIQQRGFSDLHSGLSNVQPDSPAGRSFKGDSSITECDSISGTYKHPFVSSPAQSMFDTVSSIQEPAKLNLADSSSMDLLPQSYIEFSEEYHQSSFPAQNMQPMQLTSGCSTGSFKNSKSQHQLALRQKCIRSSSNLSETHHCSYLSDEMQNMEPHSLLNVSSAFADCNLRAEHQPSMQSCLALNASNNGRDVPCQQQDILNLQKHINEKTGPSNSIRELSTIPTQRKKLRIKPHHRKCLNTCNQII*

Protein Length: 325

Fln nts: ATGGGAGGGGTGAAATTGTTCTTTCTTGGGTGCTTTTCTTGCGTCAGTACTACTAGGTTTCCCTTGTGGCCTTGTTATCAAAGACTGCCTCCTACTGCTCTGTAAGTAGGGGTGGTCTGGTGGTCGAACC_-_ATGCAAAGCACAATGCTGTCTCCTTTAACTCCCTGGCTTTATCAAGGACAGAGTCCTGAGGAATTGAAGCATCTTCTGTTCTGCACAACATTGGAGTTGGAAACTACTCGCTTAGGTGCAAAAGATGAAGTCAAACGGCACGAAGAGAATGTGAGACAACTATTGAATATTATTCATGTAACTTGCCGAGAAAGAGACGAGGCCAGGGAACAGTGTCAGAAACTGCAAGAAAAGATTCAGCAGAGGGGCTTTAGTGATCTCCATTCTGGTCTTTCAAATGTGCAGCCAGATAGTCCAGCTGGAAGATCATTCAAGGGAGACTCTAGCATCACAGAATGTGATAGTATTTCTGGCACATATAAACATCCTTTCGTATCTTCACCTGCTCAATCCATGTTTGATACTGTCTCTTCGATACAAGAGCCTGCTAAACTAAACCTTGCAGACTCCAGTAGCATGGACTTATTGCCGCAATCATACATTGAATTCTCTGAAGAGTATCATCAATCATCATTTCCTGCACAGAATATGCAACCAATGCAGCTGACTTCAGGATGCAGTACAGGCAGTTTTAAAAATTCCAAATCTCAGCACCAGTTAGCATTACGTCAAAAATGTATAAGGAGTTCTTCCAATCTATCTGAAACTCACCACTGCTCTTATCTCTCCGATGAAATGCAAAATATGGAGCCACATTCTCTTTTAAATGTAAGCTCAGCATTTGCAGACTGCAACTTGCGTGCTGAGCATCAACCGTCCATGCAGTCTTGTCTAGCCCTAAATGCATCTAATAATGGAAGAGATGTTCCATGTCAGCAACAAGATATCTTGAACTTACAAAAGCATATTAATGAAAAAACAGGACCATCCAACAGCATCAGGGAATTGAGCACCATACCCACTCAGAGGAAGAAACTCAGGATCAAACCACACCACAGAAAATGTCTGAACACTTGCAACCAGATAATTTAA___TTGTTTCTGGTAAGTGTTTGCAATCTAAAGATGCAAAACCATGCCCCCAATTCAGTGCAGAAAGTGAGTCACTGTGGCAAGCTGTTGGCAAAATGAATACCCTCGAGCAAATGAACGCAATGCCACATGAGTCTATGGCCAGTAATTGTGGGACGACAATAAGCAGCTCAATTCCTACTGTTCCAGACACACCACCTCTTGTTAGTCGGGGAATTCCTAAGCTGCAAGTGAATATGACACCTTCACAGGCTATTAGTGGACCTTCTTTAAGTATGGTGCAGTTGAAGAGATATGGGGATGTGCCCTCTGTGGTGCCTGTTCATTTACCTGAACCACCAGAAGCTGACCCCCAAGTAATAATGAAATCTCTCCCTGAGAAAGGCAAGCTGCTGGAAGCTGTAATGAAAGCTGGGCCATTGCTGCAGACTCTTTTGCTTGCAGGGCCTCTTCCACAGTGGCGACACCCCCCTCCTCCACTGGACTCTTTTGAAATCCCCTTAGTATCAATGTCCACTTCCAATGTAATAAGTCCTCTGCCAAA

Fln Alignment:

sp_v1.1_unigene18471___WLYQGQSPEELKHXXXXXXXXXXXXXXGAKDEVKRHEENVRQLLNIIHVTCRERDEAREQCQKLQEKIQQRGFSDLHSGLSNVQPDSPAGRSFKGDSSITECDSISGTYKH-PFVSSPAQSMFDTVSSIQEPAKLNLADSSSMDLLPQSYIE
B9SYP8_______________WSYQ-EGVDELKQKLLCTAIELETLKVEASEAIRKHKEDMKHLLDLLKIAYRERDEAKDQLQKLLSKLMPTSTYELHPIIPQAQPESPLVLPMKANSSITESNSLSDTYNHQSHGSSPVDSFFDAVTS-PDFSSINMADSSCINLVNKTYVQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
454		16		83	0.994512
511	80		20		0.995493
568	75		25		0.996473
641	75			25	0.996473
687		20		80	0.995493
1344		60		40	1.0
1413	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain