SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18443

Length: 1004 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18443

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	reticulon family protein (RTNLB5) [Arabidopsis thaliana] sp\|O82352.1\|RTNLE_ARATH RecName: Full=Reticulon-like protein B5; Short=AtRTNLB5 gb\|AAC62889.1\| expressed protein [Arabidopsis thaliana] gb\|AAK96651.1\| At2g46170/T3F17.18 [Arabidopsis thaliana] gb\|AA	-	-	1.0e-29	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	1.83402e-41	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reticulon	IPR003388	-	1.83402e-41	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADD4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAGENNNTLEAEESIIKPRPFPLFNLKGSLHEILGPGKALDLILWRRRNISTGVIAVATTVWFLFERCGYTLLSLVANVLMLLITILFLWSNAAAILNRPPPPLPELELSEEIIYATSTIMHAKINYALKVSREIALGKDLKLFLKVAFVLWIISTVGSWFDLLTIAYISLLISFTIPAFYEKYEDYIDKYLEITRRQLRNKTPGHEMSINMESLQPRMDVYLLVRQTELK*

Protein Length: 233

Fln nts: ATGGGGGACCAAGACAAACTTAATTGACGTCGGTCCTGGCTGTCGCTGTAAATTTACTATTCGGAATGGATGATTGCAGCCACATGGTTGTGATTTCTCTTTGTATAAAAGCTCACATTCCTCTGACTCGCTATCCGATTTCAAGATTTTCTGTGAGAAGTTTGCGCTTGGCCTTAGGACGGGACGGTCGTAGAATTGTTATTTAAGCCCAATCTGTGATGTTTTGTTGTTATTGGTTGCTTTCGTTGCGTGGACA_-_ATGGCAGGGGAGAACAATAATACTTTGGAGGCCGAGGAATCGATAATAAAGCCACGGCCTTTCCCACTCTTCAATTTAAAGGGATCTCTCCATGAAATCCTGGGACCAGGAAAGGCTCTTGATTTGATCCTTTGGAGGAGAAGAAATATTAGCACTGGTGTCATTGCAGTTGCAACAACAGTATGGTTCTTGTTTGAGCGATGTGGATACACTTTACTGTCTCTTGTTGCCAATGTGCTCATGCTTTTGATTACAATTTTGTTTCTCTGGTCAAATGCTGCTGCTATTCTCAACAGGCCTCCTCCTCCTCTACCTGAATTGGAGCTTTCAGAAGAAATAATTTATGCAACTAGCACTATCATGCACGCAAAGATTAACTATGCACTAAAGGTGTCACGAGAAATTGCTCTTGGCAAGGATTTAAAGCTTTTCTTGAAGGTGGCTTTTGTTCTGTGGATTATATCGACAGTTGGTTCCTGGTTTGATTTGCTTACAATAGCATATATAAGTCTCTTGATTTCTTTCACAATTCCGGCTTTTTATGAGAAGTATGAGGATTATATAGATAAATATCTTGAGATCACACGCAGGCAACTTAGAAACAAGACACCTGGGCATGAGATGAGCATAAATATGGAAAGCTTGCAACCAAGAATGGATGTGTACCTATTGGTTCGTCAAACTGAGCTAAAATAAGCCTGGTCAATGCTAGTCAAACATGATCTGTCTTTTAGGAAATAGGTCAAAT

Fln Alignment:

sp_v1.1_unigene18443___NNTLEAEESIIKPRPFPLFNLKGSLHEILGPGKALDLILWRRRNISTGVIAVATTVWFLFERCGYTXXXXXXXXXXXXITILFLWSNAAAILNRXXXXXXXXXXXXXIIYATSTIMHAKINYALKVSREIALGKDLKLFLKVAFVLWIISTVGSWFDLLTIAYISLLISFTIPAFYEKYEDYIDKYLEITRRQL
D5ADD4_______________SETLDSPADNVPPAPYRLFNRQKTIHEVFGGGMAADVMLWRRRGICIGVLVAATAAWYLFERSGYTFLSLISTILLLLVAILFIWANAASLLQRPLPPLPELELSEEIVNKVAASMRVRINDVLAVAHDIALGKDIKLFAKAVVFLWLFSIFGGWFNFLTLVYTGLLISLTIPALYNKYEDHVDRNAEIAHKQI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
676			14	85	0.993533
679		14	85		0.993533
681	83			16	0.994512
682	83			16	0.994512
685	83	16			0.994512
689		20		80	0.995493
693	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
554	566	CCT CCT CCT CCT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain