SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18439

Length: 1003 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18439

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicle-fusing ATPase n=2 Tax=Arabidopsis RepID=NSF_ARATH	-	-	63%
FL-Next	sp=Vesicle-fusing ATPase; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	vesicular-fusion protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Blast2go	CDC48, N-terminal subdomain	IPR003338	-	73%
Blast2go	CDC48, domain 2	IPR004201	-	73%
Blast2go	Aspartate decarboxylase-like fold	IPR009010	-	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M0Y8

Fln msg: Distance to subject end: 524 aas, your sequence is shorter than subject: 226 - 742

Fln protein: MRGAPAMPGASTTENSRKMCVTNTPGADLALTNCAYCSSSDLRTFMVPGFGQALASIGSSMVLTLRLHESIQDDYIALNAIQRRHARLSTGDTVLVSRFVPPEKKFKLVLLRLELEFVKAKGKTEQLDAVLLGKEIQKRFSDQVFSMGQRATFEYCGTNYIFTVNQTIVEGQGDNENIERGMLSKETYIIFESASNSGIKIKNQREAASSNIFKQKDFDLQKLGIG

Protein Length: 227

Fln nts: ATGGGCGGAGCATATTAAATGCCAGTTTTGTTTCACCGGCATACATGGGAAGTTTAATATGATTCCTTTGGTATATTTCGATTTCCATCCTGCTTTTAATTTTTCACTTTTGGGTTTTTTTACAGACGACTCTTACGGGCGGAGGAACTCATTCTTCCCCCATTCGCAGCAGACCTCCTGGATGCCCGTTGCGAAAGCTTAAATCTCCGACTTAAGCTGCATCGCGAACCTATCCTCAGTTTCAGTTAAACCCTAGACAACCATTGCGGAAACCGCAGATCTTTTATACTTGAAAAAAATTGGACCTTACAGGATCCGATCGCC_-_ATGCGCGGAGCACCAGCCATGCCCGGAGCATCAACCACGGAAAATAGCAGAAAAATGTGCGTGACCAACACTCCAGGAGCTGATTTGGCACTGACAAACTGTGCATATTGTTCTTCTTCTGATCTGCGAACCTTCATGGTTCCAGGATTCGGTCAGGCCTTGGCATCCATTGGATCTTCTATGGTTCTTACATTGCGTTTGCATGAAAGCATACAGGATGATTATATTGCTTTGAATGCTATTCAGCGGCGCCATGCTAGGCTTTCTACGGGGGATACTGTTTTAGTCAGTAGGTTTGTTCCACCGGAAAAAAAATTCAAGCTGGTCTTGTTAAGACTTGAACTGGAGTTTGTCAAAGCTAAGGGCAAAACTGAACAGCTTGATGCTGTCCTTCTTGGCAAGGAGATTCAAAAAAGATTCTCGGATCAGGTTTTCTCTATGGGGCAGAGAGCTACATTTGAATACTGTGGAACAAATTACATCTTCACTGTGAATCAGACTATTGTGGAAGGACAAGGAGATAATGAAAATATAGAGAGAGGAATGCTGTCAAAAGAAACATATATTATCTTTGAGTCAGCCTCAAATTCTGGCATAAAGATAAAGAATCAACGTGAAGCGGCAAGCAGCAACATTTTCAAGCAGAAGGATTTCGACCTTCAAAAATTGGGCATCGGTG

Fln Alignment:

sp_v1.1_unigene18439___MCVTNTPGADLALTNCAYCSSSDLRTFMVPGFGQALASIGSSMVLTLRLHESIQDDYIALNAIQRRHARLSTGDTVLVSRFVPPEKKFKLVLLRLELEFVKAKGKTEQLDAVLLGKEIQKRFSDQVFSMGQRATFEYCGTNYIFTVNQTIVEGQGDNENIERGMLSKETYIIFESASNSGIKIKNQREAASSNIFKQKDFDLQKLGIG
Q9M0Y8_______________MTVTNTPSADLAFTNLAYCSSSDLRQFSVPGSDLFLANVADSFILSLCGHGSIRDGNIALNAIQRRHARVSTGDMVSVSRFVPPEN-FDLAMLTLELEFVKKGTKSEQVDAALLSTQLKRKYTNQVLTVGQKATFEYHGTNYILTVNRADVEGQDHTNGIERGLLSKDTYIVFEASNASGIKIVNQREAASSNIFKHKEFNLESLGIG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
202	66		33		0.997452
225	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain