SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18436

Length: 1556 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18436

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	emb2458 (embryo defective 2458); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	64%
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	64%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	64%
Blast2go	Thiamine metabolism	00730	64%
Blast2go	Metabolic pathways	01100	64%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	64%
Blast2go	proteolysis	GO:0006508	Biological Process	64%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	64%
Blast2go	ATP binding	GO:0005524	Molecular Function	64%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS58

Fln msg: your sequence is longer than subject: 203 - 128

Fln protein: MAGCNLLGGCRIYKDYKTDNWRIEDSQIITRSYLEKKLVLCFGSYVAAQLLLPFEESNNLSTFEIEEAQELATRMVLEYGWGPDDSHVAYLTSISGKSLDIGKDHAYELEANVKKLFNAACDKAAEILQKNQKALVALLEYLLEYDVVTKQDMSRIMEENGAVQEAEPFMLISYKNYELAAEMSTNGTGRFSGSPQFSASGF*

Protein Length: 204

Fln nts: AATCAACTTTTGGTTGAACTTGATGGGTTTGACTTGGCTGCAGTGGTTGTTCTTATTGCTACAACGAGAAATCCTGAAGCCATTGATGGGGCCTTGCGCCGTCCAGGACGCATGGATAGAACAATAACCTTACCAATACCTAATGAAAGAGAAAGAGAGATGATTCTTCAATCTGCAGCAAGGACCACAATGCATGGTGGCCTTATCGATCTTGTTGATTGGAAAAAGGTTGCAAATAAAACAGCGGGGTTAATACCTGCACAGCTGATGTTTATTCCTCAGTCGCTAGAGTCCAGTGCTTTCCACAGAAAAATCTGTGATGATGAAGAATTGTTCAGTATATATGGCTGGCTTGCGACCATAGACAATATTGCTCCACGTTGGTTGAAGGATAGTAAGTTGATGAAGAATTTGTATGAGGGGCTGGTAGATCATCTTGGCTTGCGGTTGACAGAAGAAGACATGGAGTCAACAGTTGAATTAATGGAGCCATATGGCCAGATTAAACCTGGACTGGAACTTCGCAACCCTCCTACCATTTGGACAAGGGAGTTCAAGTTTCCACATGCGGTTTGGGCTGCTGGTCGAGGTTTAGTGGCTCTTCTTCTTCCTAACTTTGATTCAGTGGATCATAT_-_ATGGCTGGATGCAACTTGCTGGGAGGGTGTAGGATTTACAAAGATTACAAGACAGACAACTGGAGGATTGAAGATTCACAAATAATAACGCGGTCATATCTAGAGAAGAAACTTGTTCTGTGCTTTGGTTCATATGTTGCTGCACAGCTTTTGCTTCCATTCGAAGAAAGTAACAACTTGTCAACATTTGAAATTGAAGAGGCTCAAGAGCTAGCAACTCGCATGGTTCTTGAATATGGATGGGGTCCAGATGACAGCCATGTGGCGTATTTGACTAGCATATCGGGAAAATCTCTTGATATTGGAAAGGATCATGCATATGAACTTGAAGCCAATGTTAAGAAGTTATTCAACGCAGCATGTGATAAAGCTGCAGAAATACTTCAGAAGAACCAAAAGGCATTAGTTGCTTTGTTGGAATACTTACTTGAATATGATGTTGTAACAAAACAGGACATGTCAAGGATCATGGAAGAGAATGGAGCAGTTCAAGAGGCAGAGCCGTTTATGCTTATAAGCTACAAAAATTATGAGCTTGCTGCAGAGATGTCGACGAATGGTACAGGCCGGTTTTCTGGATCACCACAATTTTCAGCCTCTGGATTTTGA___AGCCTTCCATTCAAGTGTAGCTTCATATTCAGTTTTGTTCTTCAAAGATTTGTATACACAACGGCTTGAAATATATGTAGAGATCTTGCAGCAACCATGACTATTATAACATACTTTTTGCAGGTGTCCTTTTTTTCTATGTTAATTCTGCTTTATGGGATTGAAACATCTTTTGTAACAATATAGGTGTCAATTCCAACCATTGTATCTTCGCCATTTCCAAAGTTGAAAGAAAACAATGTCCTTCAGAGTTTTGCATGTGAAATAGGAAACATGGGGCTGGGTGCAGGCTTTACTTTTGTCTTTTCAGAT

Fln Alignment:

sp_v1.1_unigene18436___MVLEYGWGPDDSHVAYLTSISGKSLDIGKDHAYELEANVKKLFNAACDKAAEILQKNQKXXXXXXXXXXXXXXVTKQDMSRIMEENGAVQEAEPFMLISYKNYELAAEMSTNGTGRFSGSPQFSASGF
A9NS58_______________MVLEYGWGPDDSPMVYLTRISGESLDTGKDHVYELEANIKKLFNTACDKAAEILQKNHKALVALLEHLLEYDVVTKQEMSRILEENGAVQESEPFMLISYKNHELAADMSTNGTGRFSGTPQFSASGF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
153	80		20		0.995493
155	80		20		0.995493
180			80	20	0.995493
244	60			40	1.0
488	80		20		0.995493
620	33	66			0.997452
660		66		33	0.997452
842	75		25		0.996473
943	75		25		0.996473
962	80		20		0.995493
963			20	80	0.995493
969			20	80	0.995493
1011	80		20		0.995493
1418	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain