SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18432

Length: 1201 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18432

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13a n=18 Tax=Pinaceae RepID=RL13A_PICMA	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ribosomal protein l13a	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	93%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	93%
Blast2go	Ribosomal protein L13	IPR005822	-	93%
Blast2go	Ribosomal protein L13, conserved site	IPR023563	-	93%
Blast2go	Ribosomal protein L13 domain	IPR023564	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg:

Fln protein: MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHYDTITELEEKRKSKAQVSYERRKQLAKLRSKAVEIAEKQLAPEMELLASIKY*

Protein Length: 208

Fln nts: ATGGGGCCCCAACCCTTTCTTACATGTGTGCTCGGCATTTTCTTTCGGCGTTCCTTTCCTTCGTTTCGATGGTATACTAGTTTATTTATTATGTTTATTTATTATAAAAGTAGGGTTGAGATATAGCCACCAAAACCCTAATTCCAGAGGAAGGAAGAGCGAGCCCGACATTAAAACCCCCAAGTAGAGCCTTCAGAACTCTTTCGTGTGTCCAGCGAGAGACCGAGGTAACGAGGAGCAGCAGAGAGGAGGAGAACA_-_ATGGTGAGCGGATCAGGAATCTGCGCGAAGGAGGTGGTGGTAGATGCTCGCCACCACATGCTCGGCCGCCTCGCCTCTATCCTGGCCAAGGAGCTTCTCCATGGCCAGCGAGTGGTTGTGGTGCGTTGTGAAGAGATATGTATGTCTGGCGGACTTGTTCGTCAGAAGATGAAATACTTGCGTTTTCTAAGGAAGCGAATGAATACAAAGCCGTCTCATGGTCCGATTCATTTTCGAGCCCCATCAAGAATTCTTTGGAGGACAATCAGAGGAATGATTCCACACAAAACCAAGCGTGGTGCTGCAGCACTTGCTAGGCTAAGGGCTTTTGAAGGGGTTCCCCCACCATATGATAGGAAGAAGAGAATGGTCATTCCAGATGCTCTGAAAGTGTTGAGGCTTCAGCCAGGTCACAAGTACTGTCTGCTAGGAAGGCTTTCCAAAGAAGTTGGCTGGCATCACTATGACACTATTACGGAATTAGAAGAGAAGAGGAAGTCAAAGGCTCAGGTATCGTATGAGAGAAGGAAGCAATTGGCAAAATTGAGATCAAAAGCAGTTGAGATAGCTGAAAAGCAGCTTGCCCCAGAGATGGAACTCTTAGCTTCAATAAAGTATTAG___ATAAGCTGCATGCTGTGCTCAATTAAGCAATCAATTTTGAAATGACAAGAAAATATTTTTGAAGATGAGGTTTTTGACTAGAAAGATATTCATACTTCATTTGTTTAATGTTTTGCTTTTGTAGCTGAATGAGAATTTTTTGGTAAAAGTACTCGTCAGTTAGTAGTGCAATTTATCATGCGTTCTTCAAGGGGTATACTTTATAGTAAATACCAATTTCTTAGTTTGATAATATTTTTTAATATTATAGTTTGTAAACACTCATGTCGAGTTTCAGCCAATGGAAATGTGCGTTTGTCATTGTTTCGTTTCAGCTAAAAAA

Fln Alignment:

sp_v1.1_unigene18432___MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGXXXXXXXXXFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHYDTITELEEKRKSKAQVSYERRKQLAKLRSKAVEIAEKQLAPEMELLASIKY
A9NNL7_______________MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
232	33		66		1.0
307			15	84	0.999986
337		10		89	0.999919
1181			14	85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain