SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18391

Length: 666 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18391

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GH3-8; GH3 family protein	-	-	5.0e-33	57%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	57%
Blast2go	gh3 family protein	-	-	2.23412e-34	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin homeostasis	GO:0010252	Biological Process	2.23412e-34	76%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	2.23412e-34	76%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	2.23412e-34	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.23412e-34	76%
Blast2go	nucleus	GO:0005634	Cellular Component	2.23412e-34	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GH3 auxin-responsive promoter	IPR004993	-	2.23412e-34	76%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
665		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
96	107	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain