SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18372

Length: 308 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene18372
CAGCAACAGGCGTGTTGGCATCAAGAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCTAAAGGAAACAAGACTAATTGGATTATGCATGAATACCGCCTTGCTGATGTCAATAGATCTGCAAAGAAGAAGGGCAGCTTAAGGGTATGCAACTGTTCCTGTGTATTGTCTCCTTTTTATATTCCTGTGTGTTAATAGACACTGTAGGTGTTGTTTGGTTTAAAACACTTGTTATGGCCTAGTCATGACAGGGCCCAGACCAGGTAGACTTTAGAGGACGAATGTATCTGGGAAAAATCAATTTGGGAAA

Ace file of the UniGene sp_v1.1_unigene18372

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain protein, IPR003441 n=2 Tax=Populus trichocarpa RepID=B9GU14_POPTR	-	-	1.0e-14	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	nac domain ipr003441	-	-	4.61804e-19	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	4.61804e-19	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.61804e-19	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	4.61804e-19	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 179 aas, your sequence is shorter than subject: 64 - 387

Fln protein: SNRRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRVCNCSCVLSPFYIPVC*

Protein Length: 65

Fln nts: CAGCAACAGGCGTGTTGGCATCAAGAAGGCTCTGGTTTTCTATGTCGGAAAAGCTCCTAAAGGAAACAAGACTAATTGGATTATGCATGAATACCGCCTTGCTGATGTCAATAGATCTGCAAAGAAGAAGGGCAGCTTAAGGGTATGCAACTGTTCCTGTGTATTGTCTCCTTTTTATATTCCTGTGTGTTAATAGACACTGTAGGTGTTGTTTGGTTTAAAACACTTGTTATGGCCTAGTCATGACAGGGCCCAGACCAGGTAGACTTTAGAGGACGAATGTATCTGGGAAAAATCAATTTGGGAAA

Fln Alignment:

sp_v1.1_unigene18372___SNRRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRV
A9NZG8_______________SNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain