SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18369

Length: 2588 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18369
CGGTCTCGCCTTGGTCCTCACTCGATCGGCGCGGCGAACCAATTCCAATTAATCTTGGACCTATATTAGGTCTACGCCATGATGAGGCTTGAGCAAAATTAGCTGCATGGGAGGAAGCCCATGAGGCTCAAAATTTCTCTCATGTGAGCAGAACGTACGTATGATTCTGCTCTTCTTCTGATTCTGCTCTTCTTCGCTGAATGCGATTGATCGAAAAAAAGCCATGAATGACTGAATGAAACGGGAAAGAACTCGGACGGTCTGGTATTCATATATTCACGCGGGTTGGTTGGTATTGGAATAGGATTTGTTTTTCGTATTTGTTATTGATATTGATAAGAGTAGAGAGCCAATGGAGTGTGCATCGCTGAGTAGGGCCGGCATGGACGGAGGAAGCTCAAGCTCAATCCCATGCCAGTCTGTTAATGGTGGGAAGGTAAGCTCTTCCTCATGGTTACATGTGGTCCGCGGCCAGCCCTCGTCTGCTGCCGCGGCCAGTACTGCCAATTCCGAAGAAATAGAAGGCCGAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCAGTGGTGATAACGATCACAGCAAGCCAGAGGATTTGGTGCAAGTCATAGGAGGAGAAGACTGCTGGCCTGCACTTCAGGATGCTCGGAATTCCCCCAAAACGTCATTGCCACAGGGATCGTCCACACAGGTTTTGCCGCCTGCAGTACCTTTTAAAAAAGCAGCTGACAACACTAGTCCTAAACTTTCAAAGAACCCTGTTTTCAGTAATCCCCACAAATTAGCTGGCAGACGTGGGAGTCCTAATGGGATCATGCCGCCATTTTCTTCGCCTGGTATGCCTCCGTCTTCACGGATTCCCAACAAGCTTTTGCCAGTTTCTAATGTTTGTGCAGACACTGGTTTCAAGGGGAACGGGGAAACTGGAGTGAAGGGATTTATGCCTATGCCTGGTGGTAATGAGTATACCAGGCCTTCTTTGCAAAGAGGGGTCAGATCATTACACCCGCAAGGTGGCCCTAATCCATATTTGAGCAGCTATGGACATAGGCCCAACAACATACACGAGCAAAGAAGGCTTAACTATGATTGGAATTCTCAGCAAGCTCATTGGAATTCTCAGCAAGCTCTTTATGGTACAGATAATACTGCAATGTATCAAAGAGTTGGACCAAGGAATCGACCACTTCCCCCATTGATTCCTCCAAATTATGGTTTAGCAAATAATCCTGGTTTCCATGCTATACCAACAATATATTTTCCACCAAGAACACACCTAGACAGTGTTAGAGGCGGGCCTTATTTTGTGCAGCCCCCACCTCCTGGTGTGTTTGTTTCTGCACCTGATCCTCATTTGTGTGCTAGCATAGTCAAACAGATTGAGTACTACTTCAGTGTTGTAAATTTATGTAAAGATCCCTTTTTGCGTATGCATATGGATGGGCAGGGTTGGGTGCCTATTTCATTGATTGCAGGCTTTAATCTGATTAAGGCATTAACATCTGACATAAACCTCATACTTTTTGCATTGCGAAGTTCAAGCGTAGTTGAAGTGAAGGCTGACAAGATAAGGAGGCGTGATGACTGGTCAAAGTGGGTCTTACCTGCTGGAGTTATCAAATCTACGTCAAGGACTCAACCACAAGACACCTGTATAAATGTTAATACAGGCAATGTTGAAAATGATGCTAAATTGGAGGGGCAAACAAGTGTTTCGTCAAGGCATCTTATTGGATCTCCCTTAACAGAAAATGGAGTTCCAAGTGGAGTTTCATCTGAATTGGAGAGAACTTCAGATCATGGAATATCTAAGAGAACTTTTCCTGAAGGGGATATCATTAACGGTATTCTTGATATCAGGATAAATGAGACGGTATGAACTGCATTTTTATGCACTATTTTTTTCTGTACATTATAGGCTTGCTGAATGAAAAGAATCTGGTGGTGTTCCAGCAAAACTGAGTGCTGGAAGGTTTCGATTTCATATATTGGGACATGAGAAAATGTGGAATGAAACATCATAAAAACTTCTTACAGTGATCTTCAGTTTGGCAAAGAGTTGGGAATTTAACAGTTCACCTGCAAAGACCTTAATTTGCATTTTTGGAAGAAAGTTCTAAATAATTTTTAGATCATGGGCCATTACTCATGATCGAAAGGCTATGAAGTCTATTTTGGTATTTGCTATCTCGGATGGATGAACTACCTCTGGTATTTTCTGCTTGGCATGCTGGGTTGCACATTCTGCTGTCAAAATAATGACAGAAGATGACTTTGATGTAATAATGACAGCATTAATAGATCACAACTCATGACTGTTTTGGAAGTGCAACTTTTCAACTCCTTTGGTTGAATCAATTTTGAATTAGTAGTGACTCAGTGAGAATAAATGACGTGCATGCTAATTGTTGAGCTAAATAGTACATCTTCTGATATACATTCAATTCGATATTACATTTGGGNGTCATGTTGAATTAATTTGGACTTTTTGCATTGTCAAGCTTTTACTGTTTACATGACAAGTACTGATATTTGAATCATTGGCTAAGGTGTGAATCTTTCAGTTATCATTCTGATGGTACTTCGAA

Ace file of the UniGene sp_v1.1_unigene18369

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lupus la ribonucleoprotein, putative	-	-	4.0e-35	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	lupus la	-	-	5.25781e-35	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	5.25781e-35	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 141 aas, putative chimeric sequence, your sequence is longer than subject: 509 - 465

Fln protein: MECASLSRAGMDGGSSSSIPCQSVNGGKVSSSSWLHVVRGQPSSAAAASTANSEEIEGRVQQSGESGPSGSGDNDHSKPEDLVQVIGGEDCWPALQDARNSPKTSLPQGSSTQVLPPAVPFKKAADNTSPKLSKNPVFSNPHKLAGRRGSPNGIMPPFSSPGMPPSSRIPNKLLPVSNVCADTGFKGNGETGVKGFMPMPGGNEYTRPSLQRGVRSLHPQGGPNPYLSSYGHRPNNIHEQRRLNYDWNSQQAHWNSQQALYGTDNTAMYQRVGPRNRPLPPLIPPNYGLANNPGFHAIPTIYFPPRTHLDSVRGGPYFVQPPPPGVFVSAPDPHLCASIVKQIEYYFSVVNLCKDPFLRMHMDGQGWVPISLIAGFNLIKALTSDINLILFALRSSSVVEVKADKIRRRDDWSKWVLPAGVIKSTSRTQPQDTCINVNTGNVENDAKLEGQTSVSSRHLIGSPLTENGVPSGVSSELERTSDHGISKRTFPEGDIINGILDIRINETV*

Protein Length: 510

Fln nts: CGGTCTCGCCTTGGTCCTCACTCGATCGGCGCGGCGAACCAATTCCAATTAATCTTGGACCTATATTAGGTCTACGCCATGATGAGGCTTGAGCAAAATTAGCTGCATGGGAGGAAGCCCATGAGGCTCAAAATTTCTCTCATGTGAGCAGAACGTACGTATGATTCTGCTCTTCTTCTGATTCTGCTCTTCTTCGCTGAATGCGATTGATCGAAAAAAAGCCATGAATGACTGAATGAAACGGGAAAGAACTCGGACGGTCTGGTATTCATATATTCACGCGGGTTGGTTGGTATTGGAATAGGATTTGTTTTTCGTATTTGTTATTGATATTGATAAGAGTAGAGAGCCA_-_ATGGAGTGTGCATCGCTGAGTAGGGCCGGCATGGACGGAGGAAGCTCAAGCTCAATCCCATGCCAGTCTGTTAATGGTGGGAAGGTAAGCTCTTCCTCATGGTTACATGTGGTCCGCGGCCAGCCCTCGTCTGCTGCCGCGGCCAGTACTGCCAATTCCGAAGAAATAGAAGGCCGAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCAGTGGTGATAACGATCACAGCAAGCCAGAGGATTTGGTGCAAGTCATAGGAGGAGAAGACTGCTGGCCTGCACTTCAGGATGCTCGGAATTCCCCCAAAACGTCATTGCCACAGGGATCGTCCACACAGGTTTTGCCGCCTGCAGTACCTTTTAAAAAAGCAGCTGACAACACTAGTCCTAAACTTTCAAAGAACCCTGTTTTCAGTAATCCCCACAAATTAGCTGGCAGACGTGGGAGTCCTAATGGGATCATGCCGCCATTTTCTTCGCCTGGTATGCCTCCGTCTTCACGGATTCCCAACAAGCTTTTGCCAGTTTCTAATGTTTGTGCAGACACTGGTTTCAAGGGGAACGGGGAAACTGGAGTGAAGGGATTTATGCCTATGCCTGGTGGTAATGAGTATACCAGGCCTTCTTTGCAAAGAGGGGTCAGATCATTACACCCGCAAGGTGGCCCTAATCCATATTTGAGCAGCTATGGACATAGGCCCAACAACATACACGAGCAAAGAAGGCTTAACTATGATTGGAATTCTCAGCAAGCTCATTGGAATTCTCAGCAAGCTCTTTATGGTACAGATAATACTGCAATGTATCAAAGAGTTGGACCAAGGAATCGACCACTTCCCCCATTGATTCCTCCAAATTATGGTTTAGCAAATAATCCTGGTTTCCATGCTATACCAACAATATATTTTCCACCAAGAACACACCTAGACAGTGTTAGAGGCGGGCCTTATTTTGTGCAGCCCCCACCTCCTGGTGTGTTTGTTTCTGCACCTGATCCTCATTTGTGTGCTAGCATAGTCAAACAGATTGAGTACTACTTCAGTGTTGTAAATTTATGTAAAGATCCCTTTTTGCGTATGCATATGGATGGGCAGGGTTGGGTGCCTATTTCATTGATTGCAGGCTTTAATCTGATTAAGGCATTAACATCTGACATAAACCTCATACTTTTTGCATTGCGAAGTTCAAGCGTAGTTGAAGTGAAGGCTGACAAGATAAGGAGGCGTGATGACTGGTCAAAGTGGGTCTTACCTGCTGGAGTTATCAAATCTACGTCAAGGACTCAACCACAAGACACCTGTATAAATGTTAATACAGGCAATGTTGAAAATGATGCTAAATTGGAGGGGCAAACAAGTGTTTCGTCAAGGCATCTTATTGGATCTCCCTTAACAGAAAATGGAGTTCCAAGTGGAGTTTCATCTGAATTGGAGAGAACTTCAGATCATGGAATATCTAAGAGAACTTTTCCTGAAGGGGATATCATTAACGGTATTCTTGATATCAGGATAAATGAGACGGTATGA___ACTGCATTTTTATGCACTATTTTTTTCTGTACATTATAGGCTTGCTGAATGAAAAGAATCTGGTGGTGTTCCAGCAAAACTGAGTGCTGGAAGGTTTCGATTTCATATATTGGGACATGAGAAAATGTGGAATGAAACATCATAAAAACTTCTTACAGTGATCTTCAGTTTGGCAAAGAGTTGGGAATTTAACAGTTCACCTGCAAAGACCTTAATTTGCATTTTTGGAAGAAAGTTCTAAATAATTTTTAGATCATGGGCCATTACTCATGATCGAAAGGCTATGAAGTCTATTTTGGTATTTGCTATCTCGGATGGATGAACTACCTCTGGTATTTTCTGCTTGGCATGCTGGGTTGCACATTCTGCTGTCAAAATAATGACAGAAGATGACTTTGATGTAATAATGACAGCATTAATAGATCACAACTCATGACTGTTTTGGAAGTGCAACTTTTCAACTCCTTTGGTTGAATCAATTTTGAATTAGTAGTGACTCAGTGAGAATAAATGACGTGCATGCTAATTGTTGAGCTAAATAGTACATCTTCTGATATACATTCAATTCGATATTACATTTGGGaGTCATGTTGAATTAATTTGGACTTTTTGCATTGTCAAGCTTTTACTGTTTACATGACAAGTACTGATATTTGAATCATTGGCTAAGGTGTGAATCTTTCAGTTATCATTCTGATGGTACTTCGAA

Fln Alignment:

sp_v1.1_unigene18369___IVKQIEYYFSVVNLCKDPFLRMHM--DGQGWVPISLIAGFNLIKALTSDINLILFALRSSSVVEVKAD--KIRR
D5A9L9_______________VVKQVEFYFSDANLPTDKYLMKFVKKDPEGFVPIPFLANFRKVKNLVSNHSLVAAALRTSSQLVVSEDGKKVRR

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
107	75		25		0.996473
111	25		50	25	0.995533
114		25	75		0.996473
115		25	75		0.996473
116	75			25	0.996473
117	75			25	0.996473
119		75	25		0.996473
125	75			25	0.996473
126		25	75		0.996473
127	25		75		0.996473
855			14	85	0.993533
857		85	14		0.993533
860		14	85		0.993533
861			85	14	0.993533
864			14	85	0.993533
865		85	14		0.993533
867		87		12	0.992554
868	75		25		1.0
869	75			25	1.0
871	87		12		0.992554
872	75	12		12	0.975346
873			87	12	0.992554
874	12	87			0.992554
876		12		87	0.992554
877		12		87	0.992554
881		87	12		0.992554
883	87			12	0.992554
886		12		87	0.992554
887	12			87	0.992554
890	87	12			0.992554
1027		20		80	0.999996
1628	88	11			0.923564
1632		88		11	0.923564
1742		12	87		0.992554
1748		87	12		0.992554
1753	87		12		0.992554
1754	87		12		0.992554
1756	87			12	0.992554
1758	87			12	0.992554
1759	87	12			0.992554
1761	87	12			0.992554
1762		11		88	0.923564
1763		11	88		0.923564
1764			77	11	0.968132
1765	88	11			0.923564
1768			11	88	0.923564
1769	11	88			0.923564
1771	88	11			0.923564
1772	88			11	0.923564
1777	88	11			0.923564
1780			11	88	0.923564
1787		12	87		0.992554
1910	14			71	0.984337
1923		10		90	0.90298
2245		10		89	1.0
2387		87	12		0.992554
2388	87		12		0.992554
2424		16		83	0.994512
2463			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain