SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18327

Length: 671 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18327

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisome biogenesis factor, putative (EC:3.6.4.3); K13338 peroxin-1	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	peroxisome biogenesis protein pex1	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	peroxisome organization	GO:0007031	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	91%
Blast2go	peroxisome	GO:0005777	Cellular Component	91%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
104	33	66			0.997452
179	33	66			0.997452
398	16		83		0.994512
399		83		16	0.994512
401	83		16		0.994512
402		83	16		0.994512
627		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
89	103	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain