SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18316

Length: 2163 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18316
CGTCGTGACCTTGGCTGTCCTTTTGCCGTCATTCCAGAAAGGGAAACAAGACCAGGCTCCCCAGCCTCCATATGACCAGGTGCTAGGAAGCACCTCGACTTTTATTCGTCGGAGCTGGAGGTTCAGCCTTTTTCGAAGCCGGGGCGAACCGTCAGGGCGGAGGAAAAAGCCCAGCAGCTTCCGCGGGTCCTGGGTTCGATTCCTGCGGACTGCCTAATAAATGCAGTAGACATCTCGCGGGCACGTCTGAGGCAGCTGAGGTTTATTTGCACAGGATCCATGGCGGAGCCAGGGGGAGACGACTCCAAAACCTCTGAAAATCAACCCTCCATTGATACGGAACCCATGGAAATCCATGGAGAAGTTTCTTCGGTCGAAACCCCAATGGACGACGGTCTCCTAGGGAAATGTTCTGAGAACTCCAACGCGAGCACAGAGGCGTCGTCGTCCTCTTCGTCGGCTGCTCTTGAAAAAAGTTTGTTGTCGTATTCGTCTTCGTCTTCGTCGGCTCTTTTTGAGAAAAGCTCGTCGTCGAGCAAGCTTAACGCCGAAGCTCCCGTGTTTGTTCCCAGAGCGCAAGCTGCCGTTCACGTCGGAGGACCGATTTTGCCAGGCTTTACTGAACGTCCACTGCCAGAGCAGTTTTTTGAGCAGGAGGTCTTGGCGTCCGAGGCGGAGAGTGCGGCTGGCCCCATTCATTCCTCAAAGGCCGTCCTCACCGAGGAATTGAAACAAAAGGTCGTTCAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGACAAATATTTGATGAAGTTTGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCCTTGTTAGCAATCATTCTTTGGTGGCAGCTGCATTGAGGACATCTTCACAACTGGTTGTTAGTGAAGATGGGAAGAAAGTGAGGAGACTTCACCCGTTGACAGATATTGACATCGAGGAGGTGCAGTCCCGCACTGTTGTTGCAGAAAATCTGCCCAGTGATTATTCTATCCAAAATCTGGAGAAACTTTTTGGTGCTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGGTATGATTCGGGCCAAGTTTCAATGAAGGCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCACGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCTGATCTAAATGATGGAGGAAACTGGAGAAGTGGCCTTCGAGTGCAACTGCTTTTAAAGCGGATGGGTAAGTATGGACACCCAACAAAAGGACGGCAATTGGATAATGCTGATGGACATGGACATGGTGAAGAGGAAGATGTGAACAACACATCTGACACAGGAAATGATAAACAATCGAAAGTTACTGCACAACATTCAGACCGACATGATGAGTTAGAGGGAGACGCACATCACCAAAATGAAAGAAATGGAGGAAGAAAAGGCAGGGGAAGGGGACGAGGGAAGCCTCGTGGCCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCCAGTTGGCTTAGCATCAACTAGCAGTTCTAGTAGCGGTGAAGTTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTTACCATGGGTCGTGGTAGACCACTCGCTGACAGTAATGTTTAGAACCATTTTTCGTAGATGAGCTTTTGGGGCATGGAAATCTGTGATTTCTCTACTGTGAACTGTTTTTATTGTTTGCACCTTAGAGATGCTACTGAGTTTTCCAGTTTACAGCTCATCATTGTTTTGTTCTTATTTAATCGAAGATACTATTTTGATAGAGGCTTTGTTGGTGGGGCTATCTAGTTGTCTCCTCTTTCAAAGAGGAGGCTTCTTAGCAGAAAGAATATTGTACAAATGTAATTGGTTTTGGTTTTGGTCTTGGTCTGGAAAGCATCAGAAGGCCGACTGGACTTCTCTAATTACAGTAAAAATACAAATGAATGATATAGTTGTGTAATATGTCTTAAACCATTTTGTAATTACTCGAGATTTTCTTGAGACATCCTTTAAGCTTTAATCCGTATAAGCTTACTCGTAAATGTGGGGCATCATCTCCTTATTAGATGTAGTTCTATAATTGATTGCAGAAAT

Ace file of the UniGene sp_v1.1_unigene18316

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	lupus la	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	65%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	65%
Blast2go	Lupus La protein	IPR002344	-	65%
Blast2go	RNA-binding protein Lupus La	IPR006630	-	65%
Blast2go	Ataxin-2, C-terminal	IPR009818	-	65%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	65%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L9

Fln msg:

Fln protein: MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCSENSNASTEASSSSSSAALEKSLLSYSSSSSSALFEKSSSSSKLNAEAPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIHSSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNERNGGRKGRGRGRGKPRGRGQYHGNGRGHPVGLASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV*

Protein Length: 472

Fln nts: CGTCGTGACCTTGGCTGTCCTTTTGCCGTCATTCCAGAAAGGGAAACAAGACCAGGCTCCCCAGCCTCCATATGACCAGGTGCTAGGAAGCACCTCGACTTTTATTCGTCGGAGCTGGAGGTTCAGCCTTTTTCGAAGCCGGGGCGAACCGTCAGGGCGGAGGAAAAAGCCCAGCAGCTTCCGCGGGTCCTGGGTTCGATTCCTGCGGACTGCCTAATAAATGCAGTAGACATCTCGCGGGCACGTCTGAGGCAGCTGAGGTTTATTTGCACAGGATCC_-_ATGGCGGAGCCAGGGGGAGACGACTCCAAAACCTCTGAAAATCAACCCTCCATTGATACGGAACCCATGGAAATCCATGGAGAAGTTTCTTCGGTCGAAACCCCAATGGACGACGGTCTCCTAGGGAAATGTTCTGAGAACTCCAACGCGAGCACAGAGGCGTCGTCGTCCTCTTCGTCGGCTGCTCTTGAAAAAAGTTTGTTGTCGTATTCGTCTTCGTCTTCGTCGGCTCTTTTTGAGAAAAGCTCGTCGTCGAGCAAGCTTAACGCCGAAGCTCCCGTGTTTGTTCCCAGAGCGCAAGCTGCCGTTCACGTCGGAGGACCGATTTTGCCAGGCTTTACTGAACGTCCACTGCCAGAGCAGTTTTTTGAGCAGGAGGTCTTGGCGTCCGAGGCGGAGAGTGCGGCTGGCCCCATTCATTCCTCAAAGGCCGTCCTCACCGAGGAATTGAAACAAAAGGTCGTTCAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGACAAATATTTGATGAAGTTTGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCCTTGTTAGCAATCATTCTTTGGTGGCAGCTGCATTGAGGACATCTTCACAACTGGTTGTTAGTGAAGATGGGAAGAAAGTGAGGAGACTTCACCCGTTGACAGATATTGACATCGAGGAGGTGCAGTCCCGCACTGTTGTTGCAGAAAATCTGCCCAGTGATTATTCTATCCAAAATCTGGAGAAACTTTTTGGTGCTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGGTATGATTCGGGCCAAGTTTCAATGAAGGCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCACGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCTGATCTAAATGATGGAGGAAACTGGAGAAGTGGCCTTCGAGTGCAACTGCTTTTAAAGCGGATGGGTAAGTATGGACACCCAACAAAAGGACGGCAATTGGATAATGCTGATGGACATGGACATGGTGAAGAGGAAGATGTGAACAACACATCTGACACAGGAAATGATAAACAATCGAAAGTTACTGCACAACATTCAGACCGACATGATGAGTTAGAGGGAGACGCACATCACCAAAATGAAAGAAATGGAGGAAGAAAAGGCAGGGGAAGGGGACGAGGGAAGCCTCGTGGCCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCCAGTTGGCTTAGCATCAACTAGCAGTTCTAGTAGCGGTGAAGTTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTTACCATGGGTCGTGGTAGACCACTCGCTGACAGTAATGTTTAG___AACCATTTTTCGTAGATGAGCTTTTGGGGCATGGAAATCTGTGATTTCTCTACTGTGAACTGTTTTTATTGTTTGCACCTTAGAGATGCTACTGAGTTTTCCAGTTTACAGCTCATCATTGTTTTGTTCTTATTTAATCGAAGATACTATTTTGATAGAGGCTTTGTTGGTGGGGCTATCTAGTTGTCTCCTCTTTCAAAGAGGAGGCTTCTTAGCAGAAAGAATATTGTACAAATGTAATTGGTTTTGGTTTTGGTCTTGGTCTGGAAAGCATCAGAAGGCCGACTGGACTTCTCTAATTACAGTAAAAATACAAATGAATGATATAGTTGTGTAATATGTCTTAAACCATTTTGTAATTACTCGAGATTTTCTTGAGACATCCTTTAAGCTTTAATCCGTATAAGCTTACTCGTAAATGTGGGGCATCATCTCCTTATTAGATGTAGTTCTATAATTGATTGCAGAAAT

Fln Alignment:

sp_v1.1_unigene18316___MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIH--SSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNEXXXXXXXXXXXXXXXXXXXQYHGNGRGHPVGLAXXXXXXXGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV
D5A9L9_______________MAEPVRDDSKTSENQPSVDTEPMEIHGEISSVETPVDDGLKSS-----ENLNASAEASVSSSAALEKSSLSYSSSSALLEKNSSSSKLNAQAPVFVPRAQVAVHVGGLIPSSFTEHSLPEQFIEQEVVGSEPESAATPTPTPSSKAVLTEELRQKVVKQVEFYFSDANLPTDKYLMKFVKKDPEGFVPIPFLANFRKVKNLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLADTDIEEVQSRTVVAENLPNDYSIQNLEKRFGAVGNVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLQVQLLLKRMGKYGHQTKGRQSDNAD--VHGEEEDANNTSDTGNDKQSKVTTQHSDRHDDFEGDAHYPNEKNGGRKGRGRGRGKPRGRGQYHGNGRGHPLNTASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1311		88		11	0.923564
1418		93		6	0.999453
1419	93			6	0.999453
1655	90		9		0.999842
1695	85		14		0.999981
1731		88		11	0.923564
1751	87		12		0.992554
1901		79		20	1.0
1976		56	43		1.0
1984	40	59			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
489	506	TTCGTC TTCGTC TTCGTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain