SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18308

Length: 604 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Antimicrobial peptide 1 n=1 Tax=Pinus monticola RepID=AMP1_PINMO	-	-	88%
FL-Next	tr=Antimicrobial peptide 1; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	antimicrobial peptide 1	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	80%
Blast2go	defense response	GO:0006952	Biological Process	80%
Blast2go	negative regulation of growth	GO:0045926	Biological Process	80%
Blast2go	extracellular region	GO:0005576	Cellular Component	80%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
401		35		64	1.0
403	78	21			1.0
467	12		87		0.992554
547	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain