SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18303

Length: 1358 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18303

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coffea arabica RepID=E0X627_COFAR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	galactinol synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS25

Fln msg:

Fln protein: MAPEVTAEVLINIAGGKAMAVSGLRTVYSKRAYVTFLAGAGDYVKGVVGLVKGLRKVNSAYPLIVAVLPDVPEEHRQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPEELGQPPSLYFNAGMFVFEPSKLTYDTLLETLRVTPPTAFAEQDFLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSSDSMPDSETLSELQQMTSSSILAAAIPGPNPWFSLSPAA*

Protein Length: 349

Fln nts: AATGGGGAAGCAGAGTGAGTTCACTTGCTAAGCGGCATTTGCTTCCTTAGTAATTGCGAGGTAAGGTTTTCCGGGTCGTCTTCTTGTTGAGACAGAGATTTGTGCTTCAGGGAGTAGAG_-_ATGGCTCCAGAGGTAACGGCCGAGGTATTGATCAACATTGCCGGAGGTAAAGCGATGGCGGTGAGCGGCCTGCGCACCGTATACTCGAAGAGAGCTTATGTGACGTTCTTGGCTGGCGCAGGCGACTACGTCAAGGGCGTTGTCGGCCTCGTAAAAGGCCTGCGCAAGGTTAATTCGGCGTATCCCCTCATCGTAGCCGTTCTTCCAGATGTTCCCGAGGAACACAGGCAGCTTCTGAGGAGTCAGGGTTGCATTGTTCATGAAATTGAGCCCATCTATCCTCCGGAGAACCAGGTCCAGTTTGCCATGGCTTATTATGTCATCAATTATTCCAAGCTCCGGATATGGGAGTTCGAGGAATACAGCAAGCTTATATACCTGGATGCAGACATTCAAGTGTATGAGAACATCGATCACCTCTTCGATCTTCCGGACGGCCATTTCTATGCTGCGATGGACTGCTTTTGCGAAAAGACGTGGAGCCACACTCGGCAGTACAAGATCGGTTACTGCCAGCAGTGCCCGGAGAAGGTGCAGTGGCCAGAAGAATTAGGACAGCCCCCTTCCCTGTACTTTAATGCGGGCATGTTCGTGTTCGAGCCCAGCAAGCTGACGTACGATACGCTCCTTGAAACCCTAAGGGTCACCCCTCCCACGGCCTTCGCGGAGCAGGATTTCTTGAACATGTTCTTTAACAAGGTGTACAAACCAATTCCCTTGGCCTACAATCTGGTCTTGGCCATGCTATGGCGCCACCCGGAGAACGTGGATTTGGACGGAGTGAAAGTTGTCCATTACTGCGCTGCCGGATCGAAGCCGTGGAGGTACACAGGCAAGGAGGAGAACATGGACAGAGAAGATATAAAGATGTTGGTAAAGAAGTGGTGGGATATCTATAATGATCCGTCCTTGGACTTCAAATCGTCTGACTCGATGCCCGATTCGGAGACGCTCTCAGAGCTGCAACAGATGACTAGCAGCTCCATACTGGCTGCAGCCATTCCTGGACCAAATCCTTGGTTCTCTCTTTCGCCTGCCGCTTAG___GCAGCCGAATTCCGTTATCGGTCGGCAGGAGTTCGATTCTTATGCAATACAAAGTATGCTCGTCAAAGTGGTCACGCAGTTCCGTCTCATTATTTGCGAAACATACCACTGACATCGTTTGTATTTTGTATTTATAGCCGAGAGGCTCGTCGTGCCCTGAGCCAGCCATTAATGAAAATGATAATTGATAAATTT

Fln Alignment:

sp_v1.1_unigene18303___MAPEVTAEVLINIAGGKAMAVSGLRTVY-SKRAYVTFLAGAGDYXXXXXXXXXXXXXXNSAYPLIVAVLPDVPEEHRQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPEELGQPPSLYFNAGMFVFEPSKLTYDTLLETLRVTPPTAFAEQDFLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSSDSMPDSETLSELQQMTSSSILAA
A9NS25_______________MAPEVPSGAF----GGSK--VGALTSGYNSKRGYVTFLAGNGDYWKGVVGLAKGLRKVNSAYPLVVAMLPDVPEEHREILRSQGCICREIVPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLIETLRITAPTPFAEQDFLNMYFQKMYKPIPLVYNLVLAMLWRHPENVDLDKVKVVHYCAAGSKPWRYTGKEANMQREDIKVLVQKWWDVYDDESLDFKAEDSIPEAETLSDLQQITANSLLAA

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
2	66			33	0.997452
57		66		33	0.997452
64	66		33		0.997452
66			33	66	0.997452
72		66		33	0.997452
89		33	66		0.997452
114	33		66		0.997452
156	66		33		0.997452
157		33		66	0.997452
161		66		33	0.997452
170	66		33		0.997452
194		66		33	0.997452
196		50	50		1.0
199			50	50	1.0
236	50	50			1.0
257		50		50	1.0
380		12		87	0.992554
458		88		11	0.923564
459		88		11	0.923564
462	88	11			0.923564
464	88		11		0.923564
465			11	88	0.923564
466			88	11	0.923564
467		11	88		0.923564
468		11	88		0.923564
488	66		33		1.0
537	22	77			0.999999
587		37		62	1.0
663	54		45		1.0
678		88		11	0.923564
689		50	50		1.0
693	16			83	0.994512
746		80		20	0.995493
747	20	80			0.995493
866	66		33		0.997452
876		87	12		0.992554
877		87		12	0.992554
878		12	87		0.992554
880	87			12	0.992554
883	87	12			0.992554
885			87	12	0.992554
889	87	12			0.992554
892		12		87	0.992554
893	12		87		0.992554
894		12	87		0.992554
895	87			12	0.992554
897	25		75		1.0
908		50		50	1.0
920		50		50	1.0
938	50		50		1.0
964	88		11		0.923564
965		88	11		0.923564
966	88		11		0.923564
981	88		11		0.923564
1019		44		55	1.0
1044	50			50	1.0
1070	57		42		1.0
1119	40			60	1.0
1126			40	60	1.0
1133		20		80	0.995493
1138			40	60	1.0
1140		60		40	1.0
1149		40		60	1.0
1167	60		40		1.0
1169		40		60	1.0
1170			40	60	1.0
1174			60	40	1.0
1175		80		20	0.995493
1176		80	20		0.995493
1189		57		42	1.0
1192	71		28		1.0
1195	71			28	1.0
1219	16		83		0.994512
1224		16		83	0.994512
1230	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain