SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18301

Length: 2439 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18301
CGAGTGAGCTATGGGACTCCTGAGAGTGCNGTTGCTGCCAGAAAATTAATTGGACAGGCAGATGTCAATCAATAGCATACCCAAAAAGGTATTAGCATATTTATTAAAGCCACGTGGCTGGAAACCTCCTGTGCGCAGGCAATTTATTTTAGATTGCAGTGAAATAGCAGAGCTCTGTGAGAGTGCAGAACGGAAATTTTAGACTAACGAAAGAAAACCTAAAGTAGTTTTGCAAATTAAGGCTCCTGTTAAGATCTTCGGGGATTTACATGGTCAATTTGGAGATCTCATGCGCTTGTTTGATGAGTATGGTGCCCCTTCAACTGCAGGAGATATCTCATACATCGATTATCTTTTCCTGGGAGATTATGTGGACAGAGGACAGCATAGTCTGGAAACAATTGCTCTTTTGCTTGCTCTCAAGGTGGAACATCCATATAATGTACATTTGATTCGTGGAAACCATGAAGCTGCTGACATCAATGCATTATTTGGCTTTCGGATTGAGTGCATTGAACGCCTGGGTGAGAAGGAAGGAATATGGGTGTGGCAGCGTATCAATCATTTATTCAATTGGCTGCCACTAGCTGCTTTGATAGAGAAGAAAATTATCTGTATGCATGGTGGGATTGGCAGGTCAATCAACCATGTTGAGCAGATTGAAAATTTGCAACGTCCTATCACTATGGAAACTGGATCTGTTGTTCTTATGGATCTGCTATGGTCTGATCCAACGGAAAACGACAGTGTTGAAGGTTTGCGGCCAAATGCTAGAGGCCCTGGCCTAGTGACTTTTGGACCAGATCGAGTGATGGAATTCTGCAAAAACAATGATTTGCAGCTTATTATACGAGCACACGAGTGTGTCATGGATGGCTTTGAACGTTTTGCTCAAGGCCATTTAATCACTCTCTTCTCAGCCACTAATTATTGTGGAACTGCCAACAATGCAGGTGCAATCCTAGTACTAGGTAGGGACCTTGTGGTGGTTCCAAAGCTGATCCATCCTCTTCCTCCGGCAATAGCATCAGCAGAGGCATCTCCTGAAGGTCATATGGAGGACACATGGATGCAGGAGCTCAATGTTCAAAGACCACCAACACCAACAAGAGGTCGTCCCCAGGGTTCAAATGATCGAGGCTCTCTTGCATGGATTTGATGGCCAGATTTTTCGCTGCTTAGATCAGCCTTCGACTCCAGTTCATGATACTTGGTGGTGTTACTGTTCTGCATTATGCATTGTAAACTATATAGCAGTTTTGTCTGCACAAAGGTCAGATATTTTCTTTCATCATTTGTTGCTTACCTGCACAACTTTCTGTTATTCCAATTCTCTTTTCCTGGGAAGGTCCACAAGAAATTATTGACATTGTTGTGCCAACGCCTTTCATGGCATGCATAACTTCAAAGATGTGAATTCAATGCCAGAAGAGTATTATTGTAAAATGGTAAGGCTGCCAGCTTTGAAGAATCGAACCAAACAAATCATAATTTGGCCTTGGAATGGAGTTTTATGTGATCTTTTGGAGCCAGGTGCAACTTGAAGCGTCTGAAATTTGCAGCTACAACATCCAGGGTTCAGTGAAGAGTGGCAGCTGCAGAGAGCTGATTTATATGGTGTACTTGTTACTTATGGCTTCATCAAAGCAGTTGACAATGGGAGGTCTTTTGTTTGTGAATGTTGCATTAAGCTAATTTAGCTGGTCAATATTTTTCAATTTGTAGATTATTAAATATTATTCATAGGTTGGCAGGCTTTACCGAGTTGTCATTTGGCCTTGCTGTGTATCATAGTTAGAGCACATTCATGTGCCTGTCTAGAATTTTGCTGTTGTAGTACATAGACCTTTCCTCAGAGCACTATTGAGATATCAATCTATTAATTTTTAAGCATTTGCAGCGACTTAAGCTGTAAGTTCAAGGGTAAGCAGTTTCATTTATCATCTGAAATATGGTTTTGTAAATTTACCAGCTACTTGGGCTCTGGTGCCCTGGGATTATTTTTTACGGAGTCCTTTCGTCCAAAATCATTGAATCTCTCTTAATTTTAGGGATCATCGTAGAGATTTACGATTCTGCGATTATTTTGGCACCGCTAAGTACGGGCGTACAATAAAAGGTTTCTCTTGGCCACTTAGTTGCCTTTATCAAATAAGAGAGTGACAGCCAGCCAGATTAAGTGACTTAACAGTTTTATTGGGCATTCTAGCTGGATTTAGGAACCGTAGAAATGTTTTGGCTGTCGTCGTAGTTAATTATCAAATTTTCGATCTTTATTATCATCATGCCATTGCTATGTTAGAAACTAATCCTTGTATGGAGTTCATGGTGTTCATATCTATCTGTATTGTATTGTTTCTTATGCATGTTGCGATTCCAAATGCGATGGCTGCTCAAATTTCTGGTTCTCAGACCTGCCATTGTTTCTAAAGATGTGAC

Ace file of the UniGene sp_v1.1_unigene18301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=1 Tax=Vitis vinifera RepID=D7T1Q5_VITVI	-	-	83%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	kelch repeat-containing serine threonine phosphoesterase family protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	91%
Blast2go	iron ion binding	GO:0005506	Molecular Function	91%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: your sequence is longer than subject: 366 - 318

Fln protein: MSINSIPKKVLAYLLKPRGWKPPVRRQFILDCSEIAELCESAERKF*TNERKPKVVLQIKAPVKIFGDLHGQFGDLMRLFDEYGAPSTAGDISYIDYLFLGDYVDRGQHSLETIALLLALKVEHPYNVHLIRGNHEAADINALFGFRIECIERLGEKEGIWVWQRINHLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMETGSVVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCKNNDLQLIIRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAIASAEASPEGHMEDTWMQELNVQRPPTPTRGRPQGSNDRGSLAWI*

Protein Length: 367

Fln nts: CGAGTGAGCTATGGGACTCCTGAGAGTGCaGTTGCTGCCAGAAAATTAATTGGACAGGCAG_-_ATGTCAATCAATAGCATACCCAAAAAGGTATTAGCATATTTATTAAAGCCACGTGGCTGGAAACCTCCTGTGCGCAGGCAATTTATTTTAGATTGCAGTGAAATAGCAGAGCTCTGTGAGAGTGCAGAACGGAAATTTTAGACTAACGAAAGAAAACCTAAAGTAGTTTTGCAAATTAAGGCTCCTGTTAAGATCTTCGGGGATTTACATGGTCAATTTGGAGATCTCATGCGCTTGTTTGATGAGTATGGTGCCCCTTCAACTGCAGGAGATATCTCATACATCGATTATCTTTTCCTGGGAGATTATGTGGACAGAGGACAGCATAGTCTGGAAACAATTGCTCTTTTGCTTGCTCTCAAGGTGGAACATCCATATAATGTACATTTGATTCGTGGAAACCATGAAGCTGCTGACATCAATGCATTATTTGGCTTTCGGATTGAGTGCATTGAACGCCTGGGTGAGAAGGAAGGAATATGGGTGTGGCAGCGTATCAATCATTTATTCAATTGGCTGCCACTAGCTGCTTTGATAGAGAAGAAAATTATCTGTATGCATGGTGGGATTGGCAGGTCAATCAACCATGTTGAGCAGATTGAAAATTTGCAACGTCCTATCACTATGGAAACTGGATCTGTTGTTCTTATGGATCTGCTATGGTCTGATCCAACGGAAAACGACAGTGTTGAAGGTTTGCGGCCAAATGCTAGAGGCCCTGGCCTAGTGACTTTTGGACCAGATCGAGTGATGGAATTCTGCAAAAACAATGATTTGCAGCTTATTATACGAGCACACGAGTGTGTCATGGATGGCTTTGAACGTTTTGCTCAAGGCCATTTAATCACTCTCTTCTCAGCCACTAATTATTGTGGAACTGCCAACAATGCAGGTGCAATCCTAGTACTAGGTAGGGACCTTGTGGTGGTTCCAAAGCTGATCCATCCTCTTCCTCCGGCAATAGCATCAGCAGAGGCATCTCCTGAAGGTCATATGGAGGACACATGGATGCAGGAGCTCAATGTTCAAAGACCACCAACACCAACAAGAGGTCGTCCCCAGGGTTCAAATGATCGAGGCTCTCTTGCATGGATTTGA___TGGCCAGATTTTTCGCTGCTTAGATCAGCCTTCGACTCCAGTTCATGATACTTGGTGGTGTTACTGTTCTGCATTATGCATTGTAAACTATATAGCAGTTTTGTCTGCACAAAGGTCAGATATTTTCTTTCATCATTTGTTGCTTACCTGCACAACTTTCTGTTATTCCAATTCTCTTTTCCTGGGAAGGTCCACAAGAAATTATTGACATTGTTGTGCCAACGCCTTTCATGGCATGCATAACTTCAAAGATGTGAATTCAATGCCAGAAGAGTATTATTGTAAAATGGTAAGGCTGCCAGCTTTGAAGAATCGAACCAAACAAATCATAATTTGGCCTTGGAATGGAGTTTTATGTGATCTTTTGGAGCCAGGTGCAACTTGAAGCGTCTGAAATTTGCAGCTACAACATCCAGGGTTCAGTGAAGAGTGGCAGCTGCAGAGAGCTGATTTATATGGTGTACTTGTTACTTATGGCTTCATCAAAGCAGTTGACAATGGGAGGTCTTTTGTTTGTGAATGTTGCATTAAGCTAATTTAGCTGGTCAATATTTTTCAATTTGTAGATTATTAAATATTATTCATAGGTTGGCAGGCTTTACCGAGTTGTCATTTGGCCTTGCTGTGTATCATAGTTAGAGCACATTCATGTGCCTGTCTAGAATTTTGCTGTTGTAGTACATAGACCTTTCCTCAGAGCACTATTGAGATATCAATCTATTAATTTTTAAGCATTTGCAGCGACTTAAGCTGTAAGTTCAAGGGTAAGCAGTTTCATTTATCATCTGAAATATGGTTTTGTAAATTTACCAGCTACTTGGGCTCTGGTGCCCTGGGATTATTTTTTACGGAGTCCTTTCGTCCAAAATCATTGAATCTCTCTTAATTTTAGGGATCATCGTAGAGATTTACGATTCTGCGATTATTTTGGCACCGCTAAGTACGGGCGTACAATAAAAGGTTTCTCTTGGCCACTTAGTTGCCTTTATCAAATAAGAGAGTGACAGCCAGCCAGATTAAGTGACTTAACAGTTTTATTGGGCATTCTAGCTGGATTTAGGAACCGTAGAAATGTTTTGGCTGTCGTCGTAGTTAATTATCAAATTTTCGATCTTTATTATCATCATGCCATTGCTATGTTAGAAACTAATCCTTGTATGGAGTTCATGGTGTTCATATCTATCTGTATTGTATTGTTTCTTATGCATGTTGCGATTCCAAATGCGATGGCTGCTCAAATTTCTGGTTCTCAGACCTGCCATTGTTTCTAAAGATGTGAC

Fln Alignment:

sp_v1.1_unigene18301___VLAYLLKPRGWKPPVRRQFILDCSEIAELCESAERKF*TNERKPKVVLQIKAPVKIFGDLHGQFGDLMRLFDEYGAPSTAGDISYIDYLFLGDYVDRGQHSLETIALLLALKVEHPYNVHLIRGNHEAADINALFGFRIECIERLGEKEGIWVWQRINHLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMETGSVVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCKNNDLQLIIRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLV
C0PPR8_______________VIGRLLEVRGSKPGKQVQLLE--AEVRQLCILSKDIF----MKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPES------NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF----NVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELNSLDQIRNIPRP-TDVPDQGLLCDLLWSDP--SNEIQGWGSNDRGVS-YTFGPDKVSDFLQKLDLDLICRAHQVVEDGYQFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQSLM

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
868	11		88		0.923564
971			16	83	0.994512
1095	80			20	0.995493
1096		60	20	20	0.99255
1097		60	20		0.99255
1098	60		20	20	0.99255
1099		60	20	20	0.99255
1100		60	20		0.99255
1101	60		20	20	0.99255
1102	60	20		20	0.99255
1103		60	20	20	0.99255
1104	60		40		1.0
1105		80		20	0.995493
1106		80		20	0.995493
1107	80		20		0.995493
1108	60			20	0.99255
1110	80			20	0.995493
1111	60	40			1.0
1112			60	20	0.99255
1113	80	20			0.995493
1114	20		60		0.99255
1128			20	80	0.995493
1301		28		71	1.0
1384		80		20	0.995493
1386		80	20		0.995493
1387		80	20		0.995493
1482	80			20	0.995493
1550	20		80		1.0
1641		16		83	1.0
1765	12		87		1.0
2027	66		33		1.0
2028	66			33	1.0
2029	66		33		1.0
2031		33		66	1.0
2037	66		33		1.0
2038	66	33			1.0
2040		66	33		1.0
2043	33			66	1.0
2046		33		66	1.0
2047	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain