SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18279

Length: 2520 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18279
ATGTTGCCCGTTAACTGTAACCGATTGTTCATCCCAAATCCGCCGGTAGGAGCAAAGGTGAAAAGGATTCGCTTGACAGCGAGGAGATCGGGATTGGTGGAAGCCGAGGTCGAAATACATTTAAAGATCAGTGGGAGAGGAGGATACCATTCGTATCGGATCGGCCGAGGGAAAGAGAGCCGATGGTTTGTTGGAGGCGAGAGACATAGGCACTTGCAATAATTTTTTCAAGAGCGGCAAGTCCGGCTACCAGAGAAATCCGGCGACGGGGCGGAGGATTTTCTTGATTTTCTAGTATTTCTTGCATTTTGAGTGAATTTTGAGGGTGCTGAATGTGTGGGAGAGATTTCTGGTAATTTTTTTGTTATTTTACGAGGATATTGTAGCCGTGGGACCCCAGGCGGCTTACTGGTAAAAAAATCGAGTTTGAAAAGGCAGACGACGGGCTTTTCCTTTTTCTCCTTTTCTGACGGCCCCGAACAGGAGTTTGGCCAAGTTTGCGAAGGAATTTGGACTGGCCTCGCGATATCTTTGAGTTCTTTAGATTAAGGACGGATTCGCTCTTCGCTCGGCGGTTAGGAAATCATTGAAGGAGCCTGTGAAGCGGCTTTTCAATTTGATAACGGAAGAATGTCGTCGACCTTGAGCTACAGAGGTCATGAAGCTCCCTCTAACAGTGATGAGTACTCTCCTAAGCCAGAAAAGCCGTGGTCTATTATCAGGCCAGTAGATTATTTGCTCAGGGAGCAGCGGCTGCTGTTTATTTTGATAGGAATCGCCATCGCATCGACTTTCTTTATCCTTCAGCCTGGTTTTTTGGCTTCTAATGTTAATGAAAATGGAAGGTTTGTGCCCGACAAACCTCATCGGATTGTTTATGAGACTCCTGTTTCTCGGTTTGCTCAGTATCATTCGGGTTCGATGGTGAATTCGGGGGCTAAAGTGCCCCTAGGTTTGAAGAGAAAGTCCCTGCGAGTTGTCGTGACGGGTGGAGCTGGCTTTGTTGGCAGTCATCTAGTTGACAGGCTCATGGCAAGAGGCGACAGTGTTATTGTTGTCGACAATTTCTTCACAGGAAGGAAGGAGAATGTTTTGCATCATTTTGGCAATCCGAGGTTTGAACTGATAAGGCATGATGTTGTGGAACCCTTATTGTTGGAGGTTGATCAGATCTACCATTTGGCTTGCCCCGCTTCCCCTGTGCATTACAAACACAATCCTGTGAAGACTATCAAAACTAATGTTGTGGGAACCTTGAACATGCTCGGACTTGCCAAGCGTGTTGGGGCACGCTTTTTGCTTACAAGTACCAGTGAGGTTTATGGAGATCCTCTTGAACATCCTCAAACTGAAGCTTACTGGGGCAATGTTAATCCCATCGGAGTCCGCAGTTGCTATGATGAGGGTAAGAGAACAGCCGAAACTCTGACTATGGATTATCACAGGGGAGCAAATGTTGAGGTTCGGATTGCTCGAATTTTCAATACATACGGTCCGCGAATGTGCCTTGATGATGGTCGGGTTGTAAGTAATTTTGTTGCTCAGGCTTTGCGCAAGGAGCCTTTGACAGTCTATGGAGATGGGAAACAGACACGGAGTTTCCAGTTCGTTTCTGATCTGGTTGAAGGCCTTATGCGACTTATGGAGGGCGAACATGTTGGTCCTTTCAATCTTGGGAATCCTGGGGAATTTACAATGTTAGAACTAGCACAGGTTGTGAAGGAGACAATAGATACTAATGCAAAGATTGAGTTCAGACCAAACACAGAAGATGATCCACACAAGAGGAAACCTGATATTACTAAAGCAAAAGATCTACTTGGCTGGGAACCCAAAGTGTCCCTAAGAAAGGGTCTTCCCCTGATGGTCGAGGACTTCCGTCGTCGTGTTTTTGGAGATGAGAAGGATGGGAGTGTAAAGAACAAACATACCTCTCTGAATGACAGCTGAAATGTCAAAATTCTCTACACCCAGACAATGGGTGTCTAATTGCATAACGTGGCACTGTTCACATGCAAGGGCAGATCTTGTGCACATGTCAGAGTTGATGAGAGGCCCGACTAGAGTTCTTTTAGGTTAGGTTTATTCATTCATTTTTGGCATATCTCCTATCTCAGTTTCTATAGAATATGTTTGCATGATTTATATTCTGAAGTTATGTAATAACATTAGGCTCTCGAGAATTTGATCAGTTCGAATCTCTTATTTGGCATTACAAATCTTTTTGTCAAAGTGCCTTATTCCTGGTAGGCATGAAGAGAAAACTCTTGAATTGAAGCAAATTACATATCCCTTGTGCCCGTTTTCTTGATTTCCATATATGTATGGTTCAATGTTGTCAATGTTTGAAGCACTTACAAGAAGCCTCTGAACAATGGGGACTAGTTTCAATGCTGGATGCAAAAATGATACCATATTATTCATCGTTCATTGGCTTAATTGCTGGAGTTGCTAGTAATTTTTTTTAAAGCTTTTGACCAGGTTACGATGTAAAAAAAAAAAAAAAAAAAAAATTCACTG

Ace file of the UniGene sp_v1.1_unigene18279

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucuronate decarboxylase (EC:4.1.1.35)	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	udp-glucuronic acid decarboxylase 2	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		85%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	dTDP-glucose 4,6-dehydratase.	EC:4.2.1.46	-	85%

Source	KEGGs	Term	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	dTDP-rhamnose biosynthetic process	GO:0019305	Biological Process	85%
Blast2go	D-xylose metabolic process	GO:0042732	Biological Process	85%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	85%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	85%
Blast2go	dTDP-glucose 4,6-dehydratase activity	GO:0008460	Molecular Function	85%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	85%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV03

Fln msg:

Fln protein: MSSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFILIGIAIASTFFILQPGFLASNVNENGRFVPDKPHRIVYETPVSRFAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVKETIDTNAKIEFRPNTEDDPHKRKPDITKAKDLLGWEPKVSLRKGLPLMVEDFRRRVFGDEKDGSVKNKHTSLNDS*

Protein Length: 441

Fln nts: ATGTTGCCCGTTAACTGTAACCGATTGTTCATCCCAAATCCGCCGGTAGGAGCAAAGGTGAAAAGGATTCGCTTGACAGCGAGGAGATCGGGATTGGTGGAAGCCGAGGTCGAAATACATTTAAAGATCAGTGGGAGAGGAGGATACCATTCGTATCGGATCGGCCGAGGGAAAGAGAGCCGATGGTTTGTTGGAGGCGAGAGACATAGGCACTTGCAATAATTTTTTCAAGAGCGGCAAGTCCGGCTACCAGAGAAATCCGGCGACGGGGCGGAGGATTTTCTTGATTTTCTAGTATTTCTTGCATTTTGAGTGAATTTTGAGGGTGCTGAATGTGTGGGAGAGATTTCTGGTAATTTTTTTGTTATTTTACGAGGATATTGTAGCCGTGGGACCCCAGGCGGCTTACTGGTAAAAAAATCGAGTTTGAAAAGGCAGACGACGGGCTTTTCCTTTTTCTCCTTTTCTGACGGCCCCGAACAGGAGTTTGGCCAAGTTTGCGAAGGAATTTGGACTGGCCTCGCGATATCTTTGAGTTCTTTAGATTAAGGACGGATTCGCTCTTCGCTCGGCGGTTAGGAAATCATTGAAGGAGCCTGTGAAGCGGCTTTTCAATTTGATAACGGAAGA_-_ATGTCGTCGACCTTGAGCTACAGAGGTCATGAAGCTCCCTCTAACAGTGATGAGTACTCTCCTAAGCCAGAAAAGCCGTGGTCTATTATCAGGCCAGTAGATTATTTGCTCAGGGAGCAGCGGCTGCTGTTTATTTTGATAGGAATCGCCATCGCATCGACTTTCTTTATCCTTCAGCCTGGTTTTTTGGCTTCTAATGTTAATGAAAATGGAAGGTTTGTGCCCGACAAACCTCATCGGATTGTTTATGAGACTCCTGTTTCTCGGTTTGCTCAGTATCATTCGGGTTCGATGGTGAATTCGGGGGCTAAAGTGCCCCTAGGTTTGAAGAGAAAGTCCCTGCGAGTTGTCGTGACGGGTGGAGCTGGCTTTGTTGGCAGTCATCTAGTTGACAGGCTCATGGCAAGAGGCGACAGTGTTATTGTTGTCGACAATTTCTTCACAGGAAGGAAGGAGAATGTTTTGCATCATTTTGGCAATCCGAGGTTTGAACTGATAAGGCATGATGTTGTGGAACCCTTATTGTTGGAGGTTGATCAGATCTACCATTTGGCTTGCCCCGCTTCCCCTGTGCATTACAAACACAATCCTGTGAAGACTATCAAAACTAATGTTGTGGGAACCTTGAACATGCTCGGACTTGCCAAGCGTGTTGGGGCACGCTTTTTGCTTACAAGTACCAGTGAGGTTTATGGAGATCCTCTTGAACATCCTCAAACTGAAGCTTACTGGGGCAATGTTAATCCCATCGGAGTCCGCAGTTGCTATGATGAGGGTAAGAGAACAGCCGAAACTCTGACTATGGATTATCACAGGGGAGCAAATGTTGAGGTTCGGATTGCTCGAATTTTCAATACATACGGTCCGCGAATGTGCCTTGATGATGGTCGGGTTGTAAGTAATTTTGTTGCTCAGGCTTTGCGCAAGGAGCCTTTGACAGTCTATGGAGATGGGAAACAGACACGGAGTTTCCAGTTCGTTTCTGATCTGGTTGAAGGCCTTATGCGACTTATGGAGGGCGAACATGTTGGTCCTTTCAATCTTGGGAATCCTGGGGAATTTACAATGTTAGAACTAGCACAGGTTGTGAAGGAGACAATAGATACTAATGCAAAGATTGAGTTCAGACCAAACACAGAAGATGATCCACACAAGAGGAAACCTGATATTACTAAAGCAAAAGATCTACTTGGCTGGGAACCCAAAGTGTCCCTAAGAAAGGGTCTTCCCCTGATGGTCGAGGACTTCCGTCGTCGTGTTTTTGGAGATGAGAAGGATGGGAGTGTAAAGAACAAACATACCTCTCTGAATGACAGCTGA___AATGTCAAAATTCTCTACACCCAGACAATGGGTGTCTAATTGCATAACGTGGCACTGTTCACATGCAAGGGCAGATCTTGTGCACATGTCAGAGTTGATGAGAGGCCCGACTAGAGTTCTTTTAGGTTAGGTTTATTCATTCATTTTTGGCATATCTCCTATCTCAGTTTCTATAGAATATGTTTGCATGATTTATATTCTGAAGTTATGTAATAACATTAGGCTCTCGAGAATTTGATCAGTTCGAATCTCTTATTTGGCATTACAAATCTTTTTGTCAAAGTGCCTTATTCCTGGTAGGCATGAAGAGAAAACTCTTGAATTGAAGCAAATTACATATCCCTTGTGCCCGTTTTCTTGATTTCCATATATGTATGGTTCAATGTTGTCAATGTTTGAAGCACTTACAAGAAGCCTCTGAACAATGGGGACTAGTTTCAATGCTGGATGCAAAAATGATACCATATTATTCATCGTTCATTGGCTTAATTGCTGGAGTTGCTAGTAATTTTTTTTAAAGCTTTTGACCAGGTTACGATGTAAAAAAAAAAAAAAAAAAAAAATTCACTG

Fln Alignment:

sp_v1.1_unigene18279___MSSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFILIGIAIASTFFILQPGFLASNVNENGRFVPDKPHRIVYETPVSRFAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVKETIDTNAKIEFRPNTEDDPHKRKPDITKAKDLLGWEPKVSLRKGLPLMVEDFRRRVFGDEKDGSVKNKHTSLNDS
A9NV03_______________MTSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFIFIGIAIASMFFILQPGFFASNVDENARFVPDQHHRVVYETPLSRVAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVKETIDPNAKIEFRPNTEDDPHKRKPDITKAKDLLGWQPKVSLRKGLPLMVEDFRRRVFGDEKDGSIKNKHTSLNDS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
133	40		60		1.0
1953		89		10	0.999919
2279		90	10		0.90298
2283		22		77	0.999999
2333	87			12	1.0
2349	94			5	0.998744
2358		71		28	1.0
2424	12			87	0.992554
2425		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain