SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18272

Length: 544 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene18272
ATGGGGCAGAGGGTTATTCTGTGCTCAATGCGGTGTGCCATGGCATGCAGGCTTAGACTGTTCTGAATTGCAGAAATTATCGGATTCTGAGAAAGAGGAAGGTGATCTGATGCTATTCAAGCTTGCCAAAGAGAATGGCTGGCAACGGTGTGCAAGCTGTAAACATATCATTGAAATAAATTTGGGATGCTGTCACATGACTTGCAGGTGCGGTTACCAGTTCTGCTATAAATGTGGATTAGCGTGGAAGGCAACTTCTTGCCATTGCTGACCCTAAATGCAATGTGGATCAGGGTTTATTGCATTTAGGGTTAGCAAAATGCCATGTTTTGAGAGTATATTGGTTCTACACATGCTTTGCTAATGGCCACTGCATTTTTTTTGGTACGGCTTTTGGCCAACTAGCTTTTCTTGGTTGTTCGAAGTAGTGGTCCTGGTTTTGCAAAGTAGCTCTCTAGTTTTCTTGGGAAAACTGTGGGTGAATTCTCTTTTTGTGAAGTTGATGATGTTCAAAATTGTACTATTTTTCAAATTGATGATGCTC

Ace file of the UniGene sp_v1.1_unigene18272 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	5.0e-23	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	zinc finger	-	-	8.83042e-39	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	8.83042e-39	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACW0

Fln msg: your sequence is shorter than subject: 90 - 343

Fln protein: WGRGLFCAQCGVPWHAGLDCSELQKLSDSEKEEGDLMLFKLAKENGWQRCASCKHIIEINLGCCHMTCRCGYQFCYKCGLAWKATSCHC*

Protein Length: 91

Fln nts: ATGGGGCAGAGGGTTATTCTGTGCTCAATGCGGTGTGCCATGGCATGCAGGCTTAGACTGTTCTGAATTGCAGAAATTATCGGATTCTGAGAAAGAGGAAGGTGATCTGATGCTATTCAAGCTTGCCAAAGAGAATGGCTGGCAACGGTGTGCAAGCTGTAAACATATCATTGAAATAAATTTGGGATGCTGTCACATGACTTGCAGGTGCGGTTACCAGTTCTGCTATAAATGTGGATTAGCGTGGAAGGCAACTTCTTGCCATTGCTGA___CCCTAAATGCAATGTGGATCAGGGTTTATTGCATTTAGGGTTAGCAAAATGCCATGTTTTGAGAGTATATTGGTTCTACACATGCTTTGCTAATGGCCACTGCATTTTTTTTGGTACGGCTTTTGGCCAACTAGCTTTTCTTGGTTGTTCGAAGTAGTGGTCCTGGTTTTGCAAAGTAGCTCTCTAGTTTTCTTGGGAAAACTGTGGGTGAATTCTCTTTTTGTGAAGTTGATGATGTTCAAAATTGTACTATTTTTCAAATTGATGATGCTC

Fln Alignment:

sp_v1.1_unigene18272___RGLFCAQCGVPWHAGLDCSELQKLSDSEKEEGDLMLFKLAKENGWQRCASCKHIIEINLGCCHMTCRCGYQFCYKCGLAW--KATSCHC
D5ACW0_______________RRLFCAQCAVPWHGGLDCSELQRLSDSEREEFDLMLFKLAKENEWQRCASCKHMIERNSGCCHMTCRCGYQFCYKCGSEWNKNGVSCNC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
320	33		66		1.0
323	33		66		1.0
332	83			16	0.994512
401		25		75	0.996473
407		50	50		1.0
433	20		80		0.995493
453		20		80	0.995493
458	80	20			0.995493
459	20	20	60		0.99255
460	80	20			0.995493
461	80			20	0.995493
467		25		75	0.996473
488	25		75		0.996473
494	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain