SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18263

Length: 343 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene18263
TATTCTTCAAGGGCACCTTGCAGAATGGCTCTTCAGTTGGGATCAAAAGGTTTTCCCCTCACTTGATTCTCCATGCAGGTTTTGATAAAAGAAAAATGTTCAAGGAAATTAGGGTTTTGAGTAGAGTAAGGCATCCTAATTTGGTACCCCTCAGAGGATGGTGCAATGAGAAAAAAGAACTGGTTTTGATCTATGAATACATGCCTAATGGGAGCCTTGATAAATGGCTGTTTGCCAGAGGGGTTCTTCCATGGCCAAGGAGATTTAAGGTGGTGAAGGATATTGCTGAGGCTCTTTGTTTTTTGCACAGTGGGTGGGAAAAGAGCCTGTTGCATAAGAATGT

Ace file of the UniGene sp_v1.1_unigene18263 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine-threonine protein kinase, plant-type, putative	-	-	6.0e-33	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	serine-threonine protein plant-	-	-	1.46728e-36	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	1.46728e-36	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	seed germination	GO:0009845	Biological Process	1.46728e-36	67%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	1.46728e-36	67%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	1.46728e-36	67%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	1.46728e-36	67%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	1.46728e-36	67%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	1.46728e-36	67%
Blast2go	vacuole	GO:0005773	Cellular Component	1.46728e-36	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.46728e-36	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.46728e-36	67%
Blast2go	Protein kinase-like domain	IPR011009	-	1.46728e-36	67%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.46728e-36	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 113 - 636

Fln protein: FFKGTLQNGSSVGIKRFSPHLILHAGFDKRKMFKEIRVLSRVRHPNLVPLRGWCNEKKELVLIYEYMPNGSLDKWLFARGVLPWPRRFKVVKDIAEALCFLHSGWEKSLLHKN

Protein Length: 114

Fln nts: TATTCTTCAAGGGCACCTTGCAGAATGGCTCTTCAGTTGGGATCAAAAGGTTTTCCCCTCACTTGATTCTCCATGCAGGTTTTGATAAAAGAAAAATGTTCAAGGAAATTAGGGTTTTGAGTAGAGTAAGGCATCCTAATTTGGTACCCCTCAGAGGATGGTGCAATGAGAAAAAAGAACTGGTTTTGATCTATGAATACATGCCTAATGGGAGCCTTGATAAATGGCTGTTTGCCAGAGGGGTTCTTCCATGGCCAAGGAGATTTAAGGTGGTGAAGGATATTGCTGAGGCTCTTTGTTTTTTGCACAGTGGGTGGGAAAAGAGCCTGTTGCATAAGAATGT

Fln Alignment:

sp_v1.1_unigene18263___EIRVLSRVRHPNLVPLRGWCNEKKELVLIYEYMPNGSLDKWLFAR--GVLPWPRRFKVVKDIAEALCFLHSGWEKSLLHKN
A9NVC0_______________EISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain