SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18261

Length: 1095 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18261

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI	-	-	82%
FL-Next	sp=60S ribosomal protein L13; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	60s ribosomal protein	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	93%
Blast2go	ribosome	GO:0005840	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L13e	IPR001380	-	0.0	93%
Blast2go	Ribosomal protein L13e, conserved site	IPR018256	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AVT4

Fln msg:

Fln protein: MVKHNNVVPNGHFKKHWQNYVKTWFNQPARKKRRRIARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRTARKLKAGDSSPEELATATQVQGKYLPITKEKPSLELVKVTDEMKNFNAYAKLRVERMNKRLVGVRLKKAAEAEKDEKK*

Protein Length: 209

Fln nts: AAAGCAGTGGTATCAACGCAGAGTACATGGGGGAACCCCACCAAATCCACAAGCCTGGTGGGGTTTGTTGGCGTAGGCGGAACGAGTGCAGGCAGCCCTCGACCGAGAGTAGGTAAGTC_-_ATGGTGAAGCACAACAATGTTGTGCCCAATGGGCATTTTAAGAAACATTGGCAAAATTATGTGAAGACATGGTTCAACCAACCTGCACGCAAGAAGAGGAGACGTATTGCTCGTCAAAAAAAGGCTGTAAAAATCTTTCCACGCCCCACTGCCGGTCCCCTTCGACCAATTGTACATGGACAGACCCAAAAATACAACATGAAAGTTCGTGCTGGGAGAGGATTTTCACTTGAAGAGCTCAAGGCAGCAGGCATTCCCAAGAAATTAGCACCAACAATAGGTATTGCTGTTGATCATCGTCGCAGGAATCGTTCTCTAGAGAGCCTTCAAGCTAATGTTCAGAGACTGAAAACATATAAAGCGAAGTTGGTTGTCTTCCCAAGAACTGCTCGCAAGTTAAAGGCTGGTGATTCTAGTCCAGAGGAGCTGGCTACTGCAACCCAAGTACAAGGAAAGTACTTGCCAATTACTAAAGAGAAACCATCTCTTGAACTTGTTAAGGTTACTGATGAAATGAAGAACTTCAACGCATATGCAAAATTGCGTGTGGAAAGAATGAACAAGCGGTTGGTTGGAGTTCGGTTGAAAAAGGCTGCAGAGGCAGAAAAGGATGAGAAAAAGTAG___TTTTTTTGTCTTGGAGGCAGTGCCCGGGAGATACATAATGTGGTCCATTCATATCTCTTTTTAGTTAATTAATTATTTTTTTTCTATCTTCAGAAGAGAGGTGCAGTTTGTGCTGCATAGAAAAGCACAGAGCTTTTATTTTGAGATGGTAAGATGTATTTTGTGTCTGCTTCTGGTAGTGGTACTATGCATCAAAGTGAATGCTTTGATGGCACTTATTGTTTTTTACTCTGGCTCTTTTGGAATTTTATAGCTGTTTAGCTTACGCTACTAAATTAAATGCAGGTAAATGTGATTTGTTCTTTTATTTCTTTCCTTGCCTTCTACAGTAGTGTTTAAGGATTTGCATTTG

Fln Alignment:

sp_v1.1_unigene18261___MVKHNNVVPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPIVHGQTQKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRTARKLKAGDSSPEELATATQVQGKYLPITKEKPSLELVKVTDEMKNFNAYAKLRVERMNKRLVGVRL
Q9AVT4_______________MVKHNNVVPNGHFKKHWQNYVKTWFNQPARKKRRRIARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRTARKLKAGDSSPEELATATQVQGKYMTITQEKPSLELVKVTDEMKNFKAYAKLRVERMNKRLVGVRL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
34	66			33	0.997452
35	66			33	0.997452
36		66	33		0.997452
37		66		33	0.997452
39		66		33	0.997452
40	66			33	0.997452
45	66		33		0.997452
46	66	33			0.997452
48		66		33	0.997452
49		66	33		0.997452
50	66			33	0.997452
51		66	33		0.997452
52	66		33		0.997452
55		66		33	0.997452
56		66		33	0.997452
60			25	75	0.996473
232		80		20	0.995493
600	97		2		0.999525
671	96	0			0.997091
844	91		8		0.999807
979			41	58	1.0
1048	10			90	0.90298
1049		11		88	0.923564
1051		14		85	0.993533
1052	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain