SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18246

Length: 1223 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18246

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative	-	-	9.0e-37	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	plastid-specific 30s ribosomal protein 3	-	-	0.0	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	86%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	86%
Blast2go	ribosome	GO:0005840	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P110

Fln msg:

Fln protein: MTMSITIASALAVASLPSTLPSRLPPSPFNSPTTCSCSSLSSACTFGFRPLQAIISNSSSAASGCITPRIGYGSRIRLPQRESGKQKQQLQNMILKAAQVEARSAPEPQPAPEPALETEGKNKAKVVVKAPRNQRLVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLESKSWISQKRTIILLNQATDIINLWQQGGSNI*

Protein Length: 216

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTTCAAATATGTAAATACGAGGCTAAGTACTGGTAGATTTTTGTTTAAGTATTTAGCAATCTTTTATAGTTCACACCATCTTGCGTCTGACATCTAATCGATCGGTGCGACTCCATCCATTTATCCGTCCGTACAATTAATTTTTTTGTATGCAGTATTAGCGGAGGGGGAGGAGCAGGAAGGAGATAGGATAGATTGGAGAAGGAGAA_-_ATGACGATGAGCATAACCATAGCGTCTGCACTTGCAGTGGCGAGTCTACCATCCACATTACCTAGTCGGCTACCGCCATCTCCATTCAACAGTCCTACCACTTGTTCCTGCTCTTCTTTATCATCTGCATGTACATTTGGTTTCAGACCCCTCCAAGCTATTATTTCAAACTCCTCTTCTGCTGCTTCTGGTTGTATCACACCTAGAATCGGGTATGGATCTCGCATCCGATTGCCCCAAAGGGAAAGTGGAAAGCAAAAACAACAACTGCAAAATATGATTCTCAAAGCAGCCCAAGTGGAGGCACGTTCAGCGCCAGAGCCGCAGCCAGCGCCAGAGCCTGCTCTAGAAACGGAGGGGAAGAATAAGGCCAAGGTGGTGGTGAAAGCTCCTAGGAATCAGAGGCTTGTATTGAAGTTCATATGGCTTGAGAAGAACATAGGGCTTGCTCTAGATCAGGTGGTTCCAGGGCACGGAACTATCCCCTTGAGCCCTTATTACTTCTGGCCCAGGAAGGATGCATGGGAAGAACTCAAAGCCAAGCTGGAGAGCAAATCCTGGATATCTCAAAAACGCACTATAATTCTTCTTAACCAGGCCACAGATATCATTAACTTATGGCAGCAAGGTGGAAGTAATATATAG___AGATTCAGAGTAATAGTAATGTATGTATGCGCTTGCTATGTCTGGCTATTTTCATCTCTGAAGCTACAGCTAACTGCTTTTCAATTCAGATTAGGAGCACTTTTGGTTACACTAATGTAATCATGTATGTTAGGATCATTGATAGCGTTCTATGATGCTACAGTCAATATAAAGCAATCCAATCCTAAGTTAATTTGCAGGGTTAATATTTGCTATTTTGATGTCTCGAAGGAGGTTTATTAGCGTAAGATAATCCATATTATGTATGCACTTTCAGTGGTGTTGAGCACTTAGTGGCCAGCATAAAGGCATGATCATAACTGCTAAGGAATGCTACTGAC

Fln Alignment:

sp_v1.1_unigene18246___MTMSITIASALAVAXXXXXXXXXXXXXXFNXXXXXXXXXXXXXXXFGFRPLQXXXXXXXXXXXGCITPRIGYGSRIRLPQRE--SGKQKQQLQNMILKAAQVXXXXXXXXXXXXXXXXXXXGKNKAKVVVKAPRNQRLVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLESKSWISQKRTIILLNQATDIINLWQQGGSNI
A9P110_______________MTTTITITSALAVGSLPSTFPSRPLLSPCNIPSTCSCSPLSSACAFRFRPLQAIISNSSAAASGCITPRIGYGSRIQFPQKEKANGKQKQQ-QYTILKAAQVEARSEPEPEPALEKEE----KNKAKVVVKAPRKQRIVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLESKSWISQKRTIILLNQATDIINLWQQGGSNI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1020		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain