SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18234

Length: 597 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18234

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	84%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	84%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	84%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	84%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	84%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
84	66		33		0.997452
108		66		33	0.997452
111		66		33	0.997452
129			33	66	0.997452
144		33		66	0.997452
201			66	33	0.997452
203		66	33		0.997452
206	33			66	0.997452
261		50	50		1.0
300		33		66	1.0
309	33	66			0.997452
321	33	66			0.997452
324		66		33	0.997452
327		66	33		0.997452
330	33		66		0.997452
348		33		66	0.997452
363			66	33	0.997452
372		33		66	0.997452
375	66		33		0.997452
381		66		33	0.997452
396	66		33		0.997452
408	33		66		0.997452
450		50		50	1.0
470	50	50			1.0
493		50		50	1.0
495		50	50		1.0
535			50	50	1.0
546	50		50		1.0
550	66			33	0.997452
561	66			33	0.997452
570	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain