SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18222

Length: 944 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18222 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	tir nbs lrr disease resistance protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	biological regulation	GO:0065007	Biological Process	70%
Blast2go	defense response	GO:0006952	Biological Process	70%
Blast2go	cellular process	GO:0009987	Biological Process	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	0.0	70%
Blast2go	NB-ARC	IPR002182	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 33 aas, your sequence is shorter than subject: 314 - 579

Fln protein: VIATRRWERRDLG*NVGLGGVGKTTLAKEFFNNQRLKYKRCCFLFDIRDNTLTTLQSYLLKDLTQQQMEIRSTDEGKEKLRSYLPSSDCLIILDDVDHIKQLEALLLPAKDALKTNSLILVTSRNKDVLIRSQIPETSIYMLQGLEPEHSRELFCWHAFGKPHPAVGFDKAVEKFLDACLGLPLSIEVFGSLLCGINDLNHWEAQFRKISMMLPDDIQGRLRISYDGLDEEEKEIFLDIACFFIGEDRDRVIRMWNVSGWEGSLGLWKLENRCLVQVDSENRLRMPDHVRDMGRYLAEKEPPDGELRLWNPTAT

Protein Length: 315

Fln nts: ATGTCATTGCAACAAGAAGATGGGAACGTCGTGACCTTGGCTGAAACGTGGGACTTGGAGGGGTTGGCAAAACCACCCTAGCAAAAGAGTTCTTTAACAATCAGAGATTAAAATACAAGCGATGTTGCTTTTTATTTGATATAAGAGACAATACTTTAACTACCTTGCAGAGCTACCTTCTAAAGGACTTAACTCAACAGCAAATGGAAATACGCAGCACTGATGAAGGCAAAGAAAAGCTCCGAAGTTATCTTCCATCTTCTGATTGTCTCATTATTTTAGATGATGTGGACCATATTAAGCAGTTGGAGGCATTACTTTTACCAGCGAAAGATGCCCTTAAAACCAATAGCTTAATTTTAGTGACATCCCGCAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACATGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAAGCCTCATCCTGCTGTCGGATTTGACAAGGCGGTTGAAAAGTTTTTGGATGCCTGCCTTGGATTGCCATTATCTATTGAAGTGTTTGGTTCGCTTCTTTGTGGAATAAATGATTTAAATCATTGGGAAGCACAATTTCGCAAAATCTCCATGATGCTTCCTGATGATATACAAGGCAGGCTAAGAATTAGCTACGACGGTCTCGATGAGGAGGAGAAGGAGATATTCTTAGACATTGCCTGCTTCTTCATAGGAGAAGACAGAGACAGAGTCATTAGAATGTGGAATGTATCCGGCTGGGAAGGGTCGCTAGGTCTTTGGAAGCTGGAAAACAGATGCTTGGTGCAAGTGGACAGTGAAAACCGTCTGAGAATGCCTGACCATGTTAGAGACATGGGCAGATATCTGGCGGAGAAGGAACCTCCTGATGGTGAGCTTCGGCTTTGGAACCCAACTGCCACC

Fln Alignment:

sp_v1.1_unigene18222___KTTLAKEFFNNQRLKYKRCCFLFDIRDNTLTTLQSYLLKDLTQQQMEIRSTDEGKEKLRSYLPSSD-CLIILDDVDHIKQLEALLLPAKDALKTNSLILVTSRNKDVLI-RSQIPETSIYMLQGLEPEHSRELFCWHAFGKPHPAVGFDKAVEKFLDACLGLPLSIEVFGSLLCGINDLNHWEAQFRKISMMLPDDIQGRLRISYDGLDEEEKEIFLDIACFFIGEDRDRVIRMWNVSGWEGSLGLWKLENRCLVQVDSENRLRMPDHVRDMGRYLA--EKEPPDGELRLWNPT
B8LRB4_______________KTTLAKEFFNSERSNYTRFCFLFDVRSKSLHSLQSSILHDLIQNNVQINGVDEGKEKLKMHLSSSHKALIVLDDVDQSDQLDALLFPIKDVIHPDSLILITSRNKDVLTTNSEIVESSIYTLKGLNQEQSRELFCRYAFGQPLPVVGFNKVVERFLDVCQGLPLSLKVLGALLHGKDDLKYWNQQLQKTSKVLPSDIQRTLQISYDALDEDERQIFLDIACFFIGEDRDTAIKIWEESEWSGELGLWKLENRCLVEVDRENSLRMHDHIRDLGRYMAGISKNP----CRLWRLT

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
86			66	33	0.997452
124	33		66		0.997452
148	75		25		0.996473
151		25		75	0.996473
156	75			25	0.996473
157		75		25	0.996473
171	83			16	0.994512
173	50	50			1.0
174		83		16	0.994512
179	16	83			0.994512
181		33		66	1.0
194		57	42		1.0
196	14		85		0.993533
202			85	14	0.993533
204		28		71	1.0
212	28	57	14		1.0
241	12	75			0.975346
243		25		75	1.0
244		62		37	1.0
247		37		62	1.0
253		37		62	1.0
259	12		87		0.992554
278		37		62	1.0
283		88	11		0.923564
300	11	88			0.923564
310		44	55		1.0
311	33			66	1.0
325	88		11		0.923564
329	11			88	0.923564
336		87		12	0.992554
356	85			14	0.993533
363	85		14		0.993533
364	14		85		0.993533
373	14	85			0.993533
374		85	14		0.993533
378	85		14		0.993533
379		14		85	0.993533
384		14		85	0.993533
394		28		71	1.0
414		50		50	1.0
432			50	50	1.0
446		25	75		0.996473
447	50	25		25	0.995533
449	50		50		1.0
514	40	60			1.0
522	60	40			1.0
530		60	40		1.0
533	20	80			0.995493
555	85			14	0.993533
556		14		85	0.993533
568		14		85	0.993533
574			85	14	0.993533
586	85	14			0.993533
653		50	50		1.0
749		66		33	0.997452
750			66	33	0.997452
756		40		60	1.0
781		80		20	0.995493
797		20		80	0.995493
805			40	60	1.0
839	60		40		1.0
859		80	20		0.995493
861		80	20		0.995493
892	80	20			0.995493
895			40	40	1.0
896	40	40	20		1.0
897		60		40	1.0
898		60	40		1.0
901	40	20	40		1.0
902	50			50	1.0
903			50	50	1.0
904	50			50	1.0
906	66	33			0.997452
907			66	33	0.997452
908	33	66			0.997452
909		66		33	0.997452
913		33	66		0.997452
917		66		33	0.997452
918	33		66		0.997452
921		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain