SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18220

Length: 911 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	pentatricopeptide repeat-containing protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 159 aas, putative chimeric sequence, your sequence is shorter than subject: 91 - 278

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: ALKFFTQMKKAGCHPNLCTFNAIIGMYGKNGKFQKLMLTLDEMRSSGYTPDIVTWNTLVAVCGKNGMHVHVARVFKEMKKAGIHSSSRYL*

Protein Length: 92

Fln nts: GCCTTGAAGTTTTTCACACAGATGAAGAAGGCAGGTTGTCATCCCAATCTCTGCACTTTCAATGCTATCATTGGTATGTATGGAAAAAATGGAAAATTCCAAAAACTGATGTTAACATTAGATGAAATGAGGTCTAGTGGCTATACCCCTGATATAGTCACATGGAATACTCTGGTGGCTGTGTGCGGGAAAAATGGTATGCATGTGCATGTTGCTAGAGTTTTCAAGGAAATGAAGAAAGCTGGGATTCATTCCAGTTCGAGATACTTATAA___TACCCTGATTTGGGCTTATGGGAAGTGTGGGTCAGTTGATCTGGCTCTAGAAACATATAGCCAAATGATAAAAGTAGGATTTTGTCCCAATCTCTCCACTTACAATGCTCTTTTGAATGCATTAGCTAGGAAAGGGCAGTGGAAGGAAGCAGAGGCTGTCCTTGTAGATATGAAAGACAGGGGTTATAAGCTGAATGAAAATGCGTATGCTTCCCTTTTGTATGCTTATGTCAATGGTAAACACATAGTGCGGTTGAAGGCCCTTGCAGAAGATATACATTCAGGAGTCATTTATCCCAGTTGGATGCTCCTGAAAACACTTGTGATTGTATATAGCAAGTGTGATTTCCTAAAGGAGACAGAGGATGCCTTTTCAGAGTTGAAAAGACGGGGTTTTTCACCAGACTTGGTGACTTACAACACCATGATTGCAATCTACGGAAGGCATGGCTTCATTCATCAAGCTCTTGATATGTTAAATAGCATGAAACAAAATGGTTGGAAACCGGATTTGATCACATACAACTCGTTGATAAGCATGTATGGTAGGGAAGGCAACTGCATGAAATCCGAAGCTATACTGAGAGATATGAAAGTGGTTGGCAATAAGCCAGATATTGTGTCATACAACATTGTCA

Fln Alignment:

sp_v1.1_unigene18220___ALKFFTQMKKAGCHPNLCTFNAIIGMYGKNGKFQKLMLTLDEMRSSGYTPDIVTWNTLVAVCGKNGMHVHVARVFKEMKKAGIHSSS
A9NXP3_______________AVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain