SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18213

Length: 2188 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18213
ATGGGGGGACCAGTCCTGTCCCGTGTTTTAATCCTTCGTTTCTCTGTCACGCCCGCATTAATTTCATGCGACCAACGCCATGGCAAACAGCATGCGAATACGGAGAAGGTATGTAGAAACGGAACAAACCGTAGCCCTGCTCATATGACCTTGTGATGCCTTTCTGCGTACTTTATCAGCCAGTCAGAGCAATGGCGGCTCTCGTGTAACGGAGAATATTATAGCTGGCGAGACCTTAAAGGTCTTATCTACTATATGTATATACATATTTAAAGCGTCGCCTTCTTCCTGAAGTCTGCTGAAATGCGCTGTTACAGCTGAATATTTTCGCAGAAAATGTATATATTCGGTCGCAGTTGAGCAGATCTTACTGTTTTGGTAGCCAAAGGCTTCAGCATATTGTGCTTTCACAAGACTTGAGGTTAGCGGACGAAGATCACCATGGCCTTGTTCGCAAAGTTTTGCCTTGGCGGATTCTGTAACAAGAAGGCAGTTGAAAAGAAAGGCAGTACTTGGAGGGTTTTCTCATTGAAAGAGTTGCATGCAGCTACAAACAATTTCAATTATGATAATAAACTTGGTGAAGGTGGCTTTGGTAGTGTCTACTGGGGTCAACTTTGGGATGGTTCACAAATTGCTGTCAAGAGATTAAAGGTGTGGAGTACCAAAGCTGAAATGGAGTTTGCAGTGGAAGTAGAGATTCTTGGTCGAGTTAGACATAAAAATTTACTGAGCTTGCGTGGATACTGTTCTGAAGGTCAGGAACGTCTTATAGTCTATGACTACATGCCTAATCTGAGCATACTTTCACATCTCCATGGTCAACATGTCTTACAGAGTGCATTCTTGACTGGTCTAGGCGAATGAACATTGCAATTGGTTCTGCAGAGGGTATTGCTTATCTTCACCATCATGCAACGCCTCATATAATTCATGGGGATATTAAGGCAAGCAATGTACTGTTAGATACAGACTTTAAGGCTCAAGTTGCTGATTTTGGATTTGCAAAACTCATTCCTGAAGGGGCAACACATGTTACCCCACGAGTGAAAGGAACACTAGGTTATCTTGCACCTGAATATGCTATGTGGGGAAAAGCTACTGAAGGTTGTGATGTTTACAGCTTTGGAATACTATTGCTTGAACTTGTAAGTGGTAAGAAACCAGTAGATAAGATGGACTCAAACACAAAGTACACGATTGTTGACTGGGCACTTCCGTTAGTTTTAGAAGGAAAATATGATCAACTAGCTGATCCAAAGTTCCATGGAAAATACAACGAAGAGGAATTAAAGCGGGTAGTTCATGTGGCAATTATGTGTGCTCAAAATGCCCCAGAGAAGAGACCGATGATGCTGGAAGTAGTGGACTTCCTCACAGGTGAGTCGAAAGAAAAGTTATTCAAGATGATAAATATAAATATTGAGAAAAATGAAAATTTGAATGACGGGAAATGCACAAAAGAATTGCTAGAAGCCAATGAGAGTTTGGAGTGAACAATTGGATGCATGAAAGATGATCATCCAAGCTGAATCCTAAGGAAGGTGTGGAAAATGTGTGACATACACGACAATTTAAAGATAAGGTAAATGGTCATTGATTCATTTGATGATTAGTATTTGATTAGTACATTTGTTAGAGTTGCTGTAGCTCAAAGCTTTTTAAATTCCTAAAACCTCAGCTCCAGTCAGTGATGTGAAGCCACCCAGCTTTATTTTTTTGCGTCTGTTTGGGGTTCCTGTCTTGAATCTGTAATCACTAGTCTCAAAAGTAAGTCATTTTCCAGTTCTATGATTTCTTCACCAATTTGTATTGTAAAGTTAAGATAAATTGTGACTAAAAGTTATTTTCTACTTTTGAGGAAATTTTGGATTAGATAAGGCTATAATTTTTTGCTTGGGCCCTTTAGCTGCTCCAAGCTCTGTAACATTGAAGATAATGGAAAGGCAAGAAAAAATTGCAGCCCTGTAAAGTAAATCCCTCAGTGGGTTGGTAACAGCACACTTGGAGAGGATCCAAATTTAAAAGTACATGGTGTTCTGTTGCAGTGGAAGCAGTGTCCAAATCTTGCCGACTGATTATCAGTTTTTGCTACAGGCTAAATGTATGCAAATTTGTGTGTACGAAAACATTTCATGAAGTGAATATATGTGGATGACCTTGCCACTAGGCAAAGAAACTAGACTGC

Ace file of the UniGene sp_v1.1_unigene18213

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RV84_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	82%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	receptor activity	GO:0004872	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	82%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	82%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: Overlapping hits, possible frame ERROR between 837 and 837,

Fln protein: MALFAKFCLGGFCNKKAVEKKGSTWRVFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHVLxxCILDWSRRMNIAIGSAEGIAYLHHHATPHIIHGDIKASNVLLDTDFKAQVADFGFAKLIPEGATHVTPRVKGTLGYLAPEYAMWGKATEGCDVYSFGILLLELVSGKKPVDKMDSNTKYTIVDWALPLVLEGKYDQLADPKFHGKYNEEELKRVVHVAIMCAQNAPEKRPMMLEVVDFLTGESKEKLFKMININIEKNENLNDGKCTKELLEANESLE*

Protein Length: 353

Fln nts: ATGGGGGGACCAGTCCTGTCCCGTGTTTTAATCCTTCGTTTCTCTGTCACGCCCGCATTAATTTCATGCGACCAACGCCATGGCAAACAGCATGCGAATACGGAGAAGGTATGTAGAAACGGAACAAACCGTAGCCCTGCTCATATGACCTTGTGATGCCTTTCTGCGTACTTTATCAGCCAGTCAGAGCAATGGCGGCTCTCGTGTAACGGAGAATATTATAGCTGGCGAGACCTTAAAGGTCTTATCTACTATATGTATATACATATTTAAAGCGTCGCCTTCTTCCTGAAGTCTGCTGAAATGCGCTGTTACAGCTGAATATTTTCGCAGAAAATGTATATATTCGGTCGCAGTTGAGCAGATCTTACTGTTTTGGTAGCCAAAGGCTTCAGCATATTGTGCTTTCACAAGACTTGAGGTTAGCGGACGAAGATCACC_-_ATGGCCTTGTTCGCAAAGTTTTGCCTTGGCGGATTCTGTAACAAGAAGGCAGTTGAAAAGAAAGGCAGTACTTGGAGGGTTTTCTCATTGAAAGAGTTGCATGCAGCTACAAACAATTTCAATTATGATAATAAACTTGGTGAAGGTGGCTTTGGTAGTGTCTACTGGGGTCAACTTTGGGATGGTTCACAAATTGCTGTCAAGAGATTAAAGGTGTGGAGTACCAAAGCTGAAATGGAGTTTGCAGTGGAAGTAGAGATTCTTGGTCGAGTTAGACATAAAAATTTACTGAGCTTGCGTGGATACTGTTCTGAAGGTCAGGAACGTCTTATAGTCTATGACTACATGCCTAATCTGAGCATACTTTCACATCTCCATGGTCAACATGTCTTAxxxxxxTGCATTCTTGACTGGTCTAGGCGAATGAACATTGCAATTGGTTCTGCAGAGGGTATTGCTTATCTTCACCATCATGCAACGCCTCATATAATTCATGGGGATATTAAGGCAAGCAATGTACTGTTAGATACAGACTTTAAGGCTCAAGTTGCTGATTTTGGATTTGCAAAACTCATTCCTGAAGGGGCAACACATGTTACCCCACGAGTGAAAGGAACACTAGGTTATCTTGCACCTGAATATGCTATGTGGGGAAAAGCTACTGAAGGTTGTGATGTTTACAGCTTTGGAATACTATTGCTTGAACTTGTAAGTGGTAAGAAACCAGTAGATAAGATGGACTCAAACACAAAGTACACGATTGTTGACTGGGCACTTCCGTTAGTTTTAGAAGGAAAATATGATCAACTAGCTGATCCAAAGTTCCATGGAAAATACAACGAAGAGGAATTAAAGCGGGTAGTTCATGTGGCAATTATGTGTGCTCAAAATGCCCCAGAGAAGAGACCGATGATGCTGGAAGTAGTGGACTTCCTCACAGGTGAGTCGAAAGAAAAGTTATTCAAGATGATAAATATAAATATTGAGAAAAATGAAAATTTGAATGACGGGAAATGCACAAAAGAATTGCTAGAAGCCAATGAGAGTTTGGAGTGA___ACAATTGGATGCATGAAAGATGATCATCCAAGCTGAATCCTAAGGAAGGTGTGGAAAATGTGTGACATACACGACAATTTAAAGATAAGGTAAATGGTCATTGATTCATTTGATGATTAGTATTTGATTAGTACATTTGTTAGAGTTGCTGTAGCTCAAAGCTTTTTAAATTCCTAAAACCTCAGCTCCAGTCAGTGATGTGAAGCCACCCAGCTTTATTTTTTTGCGTCTGTTTGGGGTTCCTGTCTTGAATCTGTAATCACTAGTCTCAAAAGTAAGTCATTTTCCAGTTCTATGATTTCTTCACCAATTTGTATTGTAAAGTTAAGATAAATTGTGACTAAAAGTTATTTTCTACTTTTGAGGAAATTTTGGATTAGATAAGGCTATAATTTTTTGCTTGGGCCCTTTAGCTGCTCCAAGCTCTGTAACATTGAAGATAATGGAAAGGCAAGAAAAAATTGCAGCCCTGTAAAGTAAATCCCTCAGTGGGTTGGTAACAGCACACTTGGAGAGGATCCAAATTTAAAAGTACATGGTGTTCTGTTGCAGTGGAAGCAGTGTCCAAATCTTGCCGACTGATTATCAGTTTTTGCTACAGGCTAAATGTATGCAAATTTGTGTGTACGAAAACATTTCATGAAGTGAATATATGTGGATGACCTTGCCACTAGGCAAAGAAACTAGACTGC

Fln Alignment:

sp_v1.1_unigene18213___MALFAKFCLGGFCNKKAVEKKGSTWRVFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHVLxCILDWSRRMNIAIGSAEGIAYLHHHATPHIIHGDIKASNVLLDTDFKAQVADFGFAKLIPEGATHVTPRVKGTLGYLAPEYAMWGKATEGCDVYSFGILLLELVSGKKPVDKMDSNTKYTIVDWALPLVLEGKYDQLADPKFHGKYNEEELKRVVHVAIMCAQNAPEKRPMMLEVVDFLTGESKEKLFKMXXXXXXXXXXXXDGKCTKELLEANESLE
B8LQ93_______________MALFAKFCRGGVCNRKAVEKKGSTWRVFSLKELHSATNNFNYDNKLGEGAFGSVYWGQLWDGSQIAVKRLKVWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHAAxCLLDWSRRMNIAIGSAEGLAYLHHHATPHIIHRDIKASNVLLDSDFKAQVADFGFAKLIPEGETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKFHGKYNEEELKRVVHVAIMCAQNAPEKRPTMLEVVDFLTGESKEKLFKMININIDKNENLDDGKCTKEMLEANGSSE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
74	66		33		0.997452
1028	10		90		0.90298
1520		12		87	0.992554
1613		12		87	0.992554
1860	62			37	1.0
1886		85		14	0.993533
1898			83	16	0.994512
2160			83	16	0.994512
2161	83	16			0.994512
2162		83	16		0.994512
2164	16			83	0.994512
2167		80		20	0.995493
2168		80	20		0.995493
2170		75	25		0.996473
2174	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain