SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18211

Length: 2079 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18211
CGTCGTGACCTTGGCTGTCACTCAAAGAGAACATTGGAAGGGAAGCCACGATTTGACTCTATCACTCTGGAAAAATGGAGGAATGCTCTCTATGTTGTCTCAAATAAAAGCGGTTTAGATATAAACGCATGCAACGGTGACGAAGGGCAACTAGTTGATGAGGTCGTCGAAGAAGTGTGGCGAAAGGTTAGGAAAACACCTCTTAATGTGGCCAAATACCCTACTGGCCTCGTTGAGAAAATAGAAGACGTGGAAAGAATGGTGCTCTTGCAGCAGCAAAGCCAGAAGACTATGGTTGTGGGAATTGTCGGTCTTGGCGGTGTAGGGAAAACGACTCTTGCAAAAGAGTTCTTCAACAGACACACATCAAATTATGATCGACATTGTTTCCTGTCTGATGTGAGAGAAACCGCAGCGAAGAGCTCTTTAAGTTCGTTGCAGTCAAAACTTCTCAAAAACTTGGCTTATTTGGAGAACGTGCAAATAAGCAACACCGATGAAAGCATAGAGAAGCTCCGAAAGCATCTCTCATCCTCCCGCCGATCTCTGATAGTCTTAGATGATGTTGATCATATTGATCAACTTGACGCATTGTTTTCACCAGTGATAGATACCATTCAAGCCAGTAGTTTAATCTTGGTTACTTCTCGCAATAGGGATGTACTTACAAGCTCGGGAATTGTAGAGGCGTCTATTTACCAGCAAACAGGTCTTAACCCACAACAGTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTGACGGGATTTGAACAACTGGTTGAAGATTTTTTGGATTTCTGTGATGGATTGCCCTTATCTCTTAAGGTCATCGGAGCGGCCATTCGTGGAAAAGATTCTGAGATTTGGAAAAGACAGTTAGACAAAATCAAAAGAATACTTCCTGATGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTGGATAAAGAGCAGCAGGAGATCTTTTTAGACGTCGCCTGTTTTTTTATAGGAGAAAACAGAGATACCGCCATCACAATATGGAACGGATCTGGCTGGGACGGATGGCTGGGTCTCCGTAACTTAGAGAACAGATGCCTTATAGAGATCGACAGTGAAGAGTGTATAAGAATGCACGACCACCTCCGCGATCTCGGCAGAGATGTAGCAGAGAAGGAACATCCGCTTCGGCTTTCGCGACCAAATGTCAATCTTCTTCGTACTCTTTCCCCCTCATCGCCTGTGCGAGGAATTAGCATGGATTATGGAAATGGCAGCGAACAATTTTTCGAAAACGTTACGGGCAACTGCAACCTAAGCAGGTTGGAACTGCTTAGGGGTGAAGGTTCTTTTGTTGAAAGCGTATTCAGTGCAGGGGAGTTACGACAACTGATATATCTCCGATGGGAGAACTGTCCGATCTCCTCAATATCTTTCACAAGGAAAACAAGGAATTTAAGAGTGTTATACATAAAGGGGAGAAATTTGAGCAGACTACGGATTCCGCATGAACCTGAGGCACCACTACTGTTGACGCAATTGTATATTGATGCTCCCCTTTCAGAGCTTCCACAGTCTATTGGGAAACTGAATAAGCTCGAAAGAATTGTCCTGGAAAATGGTTATTTTGAAACTTTACCCAATGGATTCTCTGATATGCATTCATTGAAACATCTCAACTTTTCCTCGTGCAACATTTTGCAGAGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAGCCTCAACTTGGAACACTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAGCCTCAACTTGCAAGAGTGCACCAGCCTGCAGGGGCTCCCAGACTCAGTTGGGAACTTAACGAGACTCAAATGGCTTTACTTATCTGGGTGTTCCAATTTACAGATGCTGCCAAATTTTCAGCATTTGAGCTCGTTGGAGAAGCTTCACTTGTCTGGATGTTCCAATTTACAGATGATGCCGCCCAATGTACAGCATTTGAGCTCACTGGTGAAGCTTGATATGTCTCACTGTTCCAAACTGCAATGGGGTNCTGGAGTAGTCGAG

Ace file of the UniGene sp_v1.1_unigene18211

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	nbs lrr	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	biological regulation	GO:0065007	Biological Process	65%
Blast2go	defense response	GO:0006952	Biological Process	65%
Blast2go	cellular process	GO:0009987	Biological Process	65%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Blast2go	Disease resistance protein	IPR000767	-	65%
Blast2go	Leucine-rich repeat	IPR001611	-	65%
Blast2go	NB-ARC	IPR002182	-	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: STOP codon was not found. Distance to subject end: 20 aas, your sequence is shorter than subject: 693 - 1071

Fln protein: RRDLGCHSKRTLEGKPRFDSITLEKWRNALYVVSNKSGLDINACNGDEGQLVDEVVEEVWRKVRKTPLNVAKYPTGLVEKIEDVERMVLLQQQSQKTMVVGIVGLGGVGKTTLAKEFFNRHTSNYDRHCFLSDVRETAAKSSLSSLQSKLLKNLAYLENVQISNTDESIEKLRKHLSSSRRSLIVLDDVDHIDQLDALFSPVIDTIQASSLILVTSRNRDVLTSSGIVEASIYQQTGLNPQQSRALFCSHAFDQSCPVTGFEQLVEDFLDFCDGLPLSLKVIGAAIRGKDSEIWKRQLDKIKRILPDDIHSKLKISYDGLDKEQQEIFLDVACFFIGENRDTAITIWNGSGWDGWLGLRNLENRCLIEIDSEECIRMHDHLRDLGRDVAEKEHPLRLSRPNVNLLRTLSPSSPVRGISMDYGNGSEQFFENVTGNCNLSRLELLRGEGSFVESVFSAGELRQLIYLRWENCPISSISFTRKTRNLRVLYIKGRNLSRLRIPHEPEAPLLLTQLYIDAPLSELPQSIGKLNKLERIVLENGYFETLPNGFSDMHSLKHLNFSSCNILQRLPDSVGQLTGLQSLNLEHCTSLQGLPDSVGQLTGLQSLNLQECTSLQGLPDSVGNLTRLKWLYLSGCSNLQMLPNFQHLSSLEKLHLSGCSNLQMMPPNVQHLSSLVKLDMSHCSKLQWGTGVVE

Protein Length: 694

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGAGAACATTGGAAGGGAAGCCACGATTTGACTCTATCACTCTGGAAAAATGGAGGAATGCTCTCTATGTTGTCTCAAATAAAAGCGGTTTAGATATAAACGCATGCAACGGTGACGAAGGGCAACTAGTTGATGAGGTCGTCGAAGAAGTGTGGCGAAAGGTTAGGAAAACACCTCTTAATGTGGCCAAATACCCTACTGGCCTCGTTGAGAAAATAGAAGACGTGGAAAGAATGGTGCTCTTGCAGCAGCAAAGCCAGAAGACTATGGTTGTGGGAATTGTCGGTCTTGGCGGTGTAGGGAAAACGACTCTTGCAAAAGAGTTCTTCAACAGACACACATCAAATTATGATCGACATTGTTTCCTGTCTGATGTGAGAGAAACCGCAGCGAAGAGCTCTTTAAGTTCGTTGCAGTCAAAACTTCTCAAAAACTTGGCTTATTTGGAGAACGTGCAAATAAGCAACACCGATGAAAGCATAGAGAAGCTCCGAAAGCATCTCTCATCCTCCCGCCGATCTCTGATAGTCTTAGATGATGTTGATCATATTGATCAACTTGACGCATTGTTTTCACCAGTGATAGATACCATTCAAGCCAGTAGTTTAATCTTGGTTACTTCTCGCAATAGGGATGTACTTACAAGCTCGGGAATTGTAGAGGCGTCTATTTACCAGCAAACAGGTCTTAACCCACAACAGTCTAGAGCACTATTCTGCTCGCATGCCTTTGACCAGAGTTGTCCTGTGACGGGATTTGAACAACTGGTTGAAGATTTTTTGGATTTCTGTGATGGATTGCCCTTATCTCTTAAGGTCATCGGAGCGGCCATTCGTGGAAAAGATTCTGAGATTTGGAAAAGACAGTTAGACAAAATCAAAAGAATACTTCCTGATGATATTCATAGCAAGCTTAAAATTAGCTATGATGGTCTGGATAAAGAGCAGCAGGAGATCTTTTTAGACGTCGCCTGTTTTTTTATAGGAGAAAACAGAGATACCGCCATCACAATATGGAACGGATCTGGCTGGGACGGATGGCTGGGTCTCCGTAACTTAGAGAACAGATGCCTTATAGAGATCGACAGTGAAGAGTGTATAAGAATGCACGACCACCTCCGCGATCTCGGCAGAGATGTAGCAGAGAAGGAACATCCGCTTCGGCTTTCGCGACCAAATGTCAATCTTCTTCGTACTCTTTCCCCCTCATCGCCTGTGCGAGGAATTAGCATGGATTATGGAAATGGCAGCGAACAATTTTTCGAAAACGTTACGGGCAACTGCAACCTAAGCAGGTTGGAACTGCTTAGGGGTGAAGGTTCTTTTGTTGAAAGCGTATTCAGTGCAGGGGAGTTACGACAACTGATATATCTCCGATGGGAGAACTGTCCGATCTCCTCAATATCTTTCACAAGGAAAACAAGGAATTTAAGAGTGTTATACATAAAGGGGAGAAATTTGAGCAGACTACGGATTCCGCATGAACCTGAGGCACCACTACTGTTGACGCAATTGTATATTGATGCTCCCCTTTCAGAGCTTCCACAGTCTATTGGGAAACTGAATAAGCTCGAAAGAATTGTCCTGGAAAATGGTTATTTTGAAACTTTACCCAATGGATTCTCTGATATGCATTCATTGAAACATCTCAACTTTTCCTCGTGCAACATTTTGCAGAGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAGCCTCAACTTGGAACACTGCACCAGCCTGCAGGGGCTCCCAGACTCGGTGGGGCAGCTGACGGGCCTCCAGAGCCTCAACTTGCAAGAGTGCACCAGCCTGCAGGGGCTCCCAGACTCAGTTGGGAACTTAACGAGACTCAAATGGCTTTACTTATCTGGGTGTTCCAATTTACAGATGCTGCCAAATTTTCAGCATTTGAGCTCGTTGGAGAAGCTTCACTTGTCTGGATGTTCCAATTTACAGATGATGCCGCCCAATGTACAGCATTTGAGCTCACTGGTGAAGCTTGATATGTCTCACTGTTCCAAACTGCAATGGGGTaCTGGAGTAGTCGAG

Fln Alignment:

sp_v1.1_unigene18211___TLEGKPRFDSITLEKWRNALYVVSNKSGLDINACNGDEGQLVDXXXXXXWRKVRKT--PLNVAKYPTGLVEKIEDVERMVLLQQQSQKTMXXXXXXXXXXXKTTLAKEFFNRHTSNYDRHCFLSDVRETXXXXXXXXXXXXXXXXXXYLENVQISNTDESIEXXXXXXXXXXXXXIVLDDVDHIDQLDALFSPVIDTIQASSLILVTSRNRDVLTSSGIVEASIYQQTGLNPQQSRALFCSHAFDQSCPVTGFEQLVEDFLDFCDGLPLSLKVIGAAIRGKDSEIWKRQLDKIKRILPDDIHSKLKISYDGLDKEQQEIFLDVACFFIGENRDTAITIWNGSGWDGWLGLRNLENRCLIEIDSEECIRMHDHLRDLGRDVAE-KEHPLRLSRPNVNLLRTLSPSSPVRGISMDYGNGSEQFFENVTGNCNLSRLELLRGEGSFVESVFSAGELRQLIYLRWENCPISSISFTRKTRNLRVLYIKGRNLSRLRIPHEPEAPLLLTQLYIDAPLSELPQSIGKLNKLERIVLENG------------------------YFETLPNGFSDMHSLKHLNFSSCNILQRLPDSVGQLTGLQSLNLEHCTSLQGLPDSVGQLTGLQSLNLQECTSLQGLPDSVGNLTRLKWLYLSGCSNLQMLP-NFQHLSSLEKLHLSGCSNLQMMPPNVQHLSSLVKLDMSHCSKLQ
C0PQE2_______________TNKKKPRHDSDTIEKWRKALSDVSLISGFELNACNGDERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQRKKARVVGIVGLGGIGKTTLAKKIYNREKSNYKRICLLRDVRSSNLHSLQSRLLKELNQ-----SSAQINDIDEGIEKLKTYSERAL---IVLDDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKDLWYWKEQLGKTSTILPRKVRSTLEISFDALDKQEKEVFLDIACFFIGENRDT-IRI-----WDGWLNLENLKNRCLVEVDSENCLRMHDHLRDLGRDLAENSEYPRRIWRMTDSLLHNVSDQSPVRGISMVHRNGSER-------SCNLSNCKLLKAESHFVEQVLSNGQLLPLIYLRWENYPKSSLPPSLPSMNLRVLHIQGKQLKTL-WQHESQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVLYNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCSTLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQ

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
22	33	66			0.997452
23	33			66	0.997452
24	33	66			0.997452
25	66		33		0.997452
552		33	66		1.0
553	66	33			0.997452
558	33	66			0.997452
589		33	66		0.997452
591		66		33	0.997452
606	66		33		0.997452
607			66	33	0.997452
609			66	33	0.997452
611	33			66	0.997452
624	33		66		1.0
625			66	33	0.997452
626		33		66	1.0
634		40		60	1.0
659			80	20	0.995493
676			20	80	0.995493
680	20		80		0.995493
688	20		80		0.995493
691	40		60		1.0
693		40	60		1.0
695		80		20	0.995493
699		20		80	0.995493
704	80		20		0.995493
715	20	80			0.995493
721	20	80			0.995493
722		80	20		0.995493
729			80	20	0.995493
776			16	83	0.994512
777			83	16	0.994512
811	16		83		0.994512
816		83		16	0.994512
858		66		33	0.997452
1063	25		75		0.996473
1068	25			75	0.996473
1103			25	75	0.996473
1104	75		25		0.996473
1167		11	88		0.923564
1187	50		50		1.0
1199		22	77		0.999999
1210		11		88	0.923564
1237		87		12	0.992554
1264	90		10		0.90298
1272	90	10			0.90298
1276	10		90		0.90298
1280		80		20	0.999996
1285	90			10	0.90298
1290		10		90	0.90298
1292		90		10	0.90298
1296	30	20	10	40	1.0
1299	72		27		1.0
1301		18		81	0.999994
1303		27	72		1.0
1306	9		18	72	0.999994
1335		90		10	0.90298
1346	85			14	0.993533
1350			14	85	0.993533
1351	14	85			0.993533
1373			12	87	0.992554
1374			87	12	0.992554
1377	37		62		1.0
1378		50	50		1.0
1383		12		87	0.992554
1386		87	12		0.992554
1397	87		12		0.992554
1405	12		87		0.992554
1415		50	50		1.0
1420		62		37	1.0
1425		14		85	0.993533
1426		85		14	0.993533
1443	71		28		1.0
1444			33	66	1.0
1445			33	66	1.0
1446	33	66			1.0
1447	16	66		16	0.988813
1454	20		80		0.995493
1463	83		16		0.994512
1467	20			80	0.995493
1476	33		66		1.0
1493	33	66			0.997452
1500		66		33	0.997452
1531	33			66	0.997452
1564		66		33	0.997452
1569		66	33		0.997452
1596	66	33			0.997452
1644	33	66			0.997452
1649	33		66		0.997452
1730	75		25		0.996473
1750		75	25		0.996473
1753	33	33	33		0.997753
1759		33	66		0.997452
1762	33	66			0.997452
1763	33		33	33	0.997753
1764		66	33		0.997452
1768	66			33	0.997452
1774		66	33		0.997452
1780	33		66		0.997452
1809	33		66		0.997452
1816	33	66			0.997452
1818		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain