SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18199

Length: 964 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18199

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyltransferase; K13513 lysocardiolipin and lysophospholipid acyltransferase [EC:2.3.1.- 2.3.1.51]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	acyl- :1-acylglycerol-3-phosphate acyltransferase	-	-	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	56%

Source	KEGGs	Term	Type	Identity
AutoFact	Fatty acid biosynthesis	00061		56%
AutoFact	Tetracycline biosynthesis	00253		56%
AutoFact	Lysine degradation	00310		56%
AutoFact	Arginine and proline metabolism	00330		56%
AutoFact	Histidine metabolism	00340		56%
AutoFact	Tyrosine metabolism	00350		56%
AutoFact	Benzoate degradation	00362		56%
AutoFact	Lipopolysaccharide biosynthesis	00540		56%
AutoFact	Glycerophospholipid metabolism	00564		56%
AutoFact	Ether lipid metabolism	00565		56%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604		56%
AutoFact	Toluene degradation	00623		56%
AutoFact	Naphthalene degradation	00626		56%
AutoFact	Aminobenzoate degradation	00627		56%
AutoFact	Ethylbenzene degradation	00642		56%
AutoFact	Butanoate metabolism	00650		56%
AutoFact	Methane metabolism	00680		56%
AutoFact	Limonene and pinene degradation	00903		56%
AutoFact	Diterpenoid biosynthesis	00904		56%
AutoFact	Carotenoid biosynthesis	00906		56%
AutoFact	Anthocyanin biosynthesis	00942		56%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		56%
AutoFact	Isoquinoline alkaloid biosynthesis	00950		56%
AutoFact	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		56%
AutoFact	Betalain biosynthesis	00965		56%
AutoFact	Biosynthesis of unsaturated fatty acids	01040		56%
AutoFact	Biosynthesis of type II polyketide backbone	01056		56%
AutoFact	Biosynthesis of terpenoids and steroids	01062		56%
AutoFact	Metabolic pathways	01100		56%
AutoFact	Biosynthesis of secondary metabolites	01110		56%
AutoFact	1-acylglycerol-3-phosphate O-acyltransferase.	EC:2.3.1.51	-	56%

Source	KEGGs	Term	Identity
AutoFact	Glycerolipid metabolism	00561	56%
AutoFact	Glycerophospholipid metabolism	00564	56%
AutoFact	Metabolic pathways	01100	56%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	72%
Blast2go	acyltransferase activity	GO:0008415	Molecular Function	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	plastid	GO:0009536	Cellular Component	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNT3

Fln msg: your sequence is shorter than subject: 264 - 443

Fln protein: RRDLGCHSSVRNIPIFGWAFYILEFILIERKWELDKPVIESMLATFKDPRDPLWLVLFPEGTDFTEKKCKRSQQFAQENGLPILNNVLLPRTKGFTACLDSLRGSLDAVYDVTIGYKYRWPLFMDNVFGVDPAEVHLHIRRVPLSEIPPSEDGGAAWLIEAFRRKDELLSTFSKEGCFPGAVNEEELPSFKCFFNLAVMIIATGFFSTIIIISSMWLKIYLALSCVYFATATYLNCRPTPILGCLKGWMLHSSTFISSSQQDL*

Protein Length: 265

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGTGCGCAATATACCTATCTTTGGTTGGGCATTTTACATCCTTGAGTTTATTCTGATTGAGAGAAAATGGGAGCTGGACAAACCAGTCATAGAATCGATGCTTGCAACATTCAAGGACCCACGAGACCCCTTGTGGCTTGTTCTCTTTCCCGAAGGCACAGACTTCACAGAGAAGAAATGCAAAAGAAGCCAACAGTTTGCTCAAGAAAATGGTTTACCTATCCTAAACAATGTGCTTCTACCTAGAACAAAAGGTTTCACTGCTTGCCTGGATAGTCTTCGGGGTTCTCTAGATGCAGTTTATGATGTGACGATTGGTTACAAGTATCGATGGCCTCTGTTTATGGATAATGTCTTTGGAGTTGATCCCGCCGAAGTACATCTTCATATTCGTCGTGTACCACTCAGTGAGATTCCTCCCAGTGAAGATGGAGGTGCCGCTTGGCTTATTGAAGCTTTTCGTCGTAAGGACGAGCTGCTTTCTACTTTCTCTAAAGAAGGTTGTTTCCCCGGCGCTGTCAACGAAGAGGAACTTCCTTCCTTCAAGTGTTTTTTCAACTTAGCTGTGATGATTATTGCCACGGGCTTCTTTTCCACTATCATTATTATTTCTTCCATGTGGCTAAAAATATATCTTGCGTTAAGCTGTGTGTATTTTGCCACTGCAACTTACCTCAATTGCAGGCCAACACCTATACTAGGGTGTCTAAAGGGATGGATGTTACATAGTAGTACCTTCATATCATCAAGTCAACAAGATTTGTGA___CTTGCTAATACCTTTTATGCACACCATAGGAAATACTTATCATTAATTTTTTTTTGATTGCCTGTTGTGTAAACGTGCCTTCTTTGGCTTCTGATTAGAAGGATGCAGTTCAGTATTCTGGATTATTAACATGGCTAATGGTTGTATCATAGACACAGCTCATATATGGAAC

Fln Alignment:

sp_v1.1_unigene18199___SSVRNIPIFGWAFYILEFILIERKWELDKPVIESMLATFKDPRDPLWLVLFPEGTDFTEKKCKRSQQFAQENGLPILNNVLLPRTKGFTACLDSLRGSLDAVYDVTIGYKYRWPLFMDNVFGVDPAEVHLHIRRVPLSEIPPSEDGGAAWLIEAFRRKDELLSTFSKEGCFPGAVNEEELPSFKCFFNLAVMXXXXXXXXXXXXXXXMWLKIYLALSCVYFATATYLNCRPTPILGCLKGWMLHSSTFISSSQ
B8LNT3_______________SSVRNAPIFGWGFHILEFILVERKWEVDEPVIESMLSTFKDPQDPLWLILFPEGTDFTEQKCLRSQRFAEENHLPILKNVLQPKTKGFYSCLTLLRDSLDAVYDVTIAYKHRFPLFMDNAYGTDPAEVHIHVRRVPLHEIPTSENEAAAWLVEAFRLKDALLSNFYKEGSFPNSGTEEELPNFKCFLNLLVIIGLSGLFLFLTFSSFMWIKVYVASSCVYLAAATYFNSRPKPIFGSLKR-RIRGNTYKSSHQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
508			20	80	0.995493
510		20		80	0.995493
511		80	20		0.995493
516		20		80	0.995493
519		80	20		0.995493
520			20	80	0.995493
523	80		20		0.995493
524	80			20	0.995493
525	80	20			0.995493
526	20		80		0.995493
527	80	20			0.995493
528	80			20	0.995493
529		20	80		0.995493
530	20		80		0.995493
812	87			12	0.992554
860		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain