SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18196

Length: 2344 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18196
ATGGGGATGGTCACATGGGTGGCTCTCTCTTCGAGGTTCAGTAAATTGTCGTTCCCTTTGGTCACTTAGTTTTTTCATTTAGCATCATTACTGCTCGCTACACTTATACCCACTTTTCTTCCCTCTTGTTCTTTGAGCTGCTCATGGGGTCTGTGCGTGTGCCCGTTAGATGAATTTACGAATTTGGTTTTGGTTGAAATGCAGTCATGACGGTTCAATGGGAACAAAGCACAATACCCCCATTGTGATTGGGGTCCCGAAGGTTAAAATTTTGGGGTTCTGCACGGGAATCGATCCTGTGACTGCCTGTTGGCAATTGATACTTGTTGTGCAATACCCCATTTATGAATACAGCAAGAATGCCTTGAATGCTTCTGCTTACATGGCAGAGCTGTTTTATTGAGGGGTTTCGCCATTCACTGTGGAGAATCTCCAAAATCTTCCATTCGCTGACGCAGAACCTGCCCCAGTACGAGACTGTTGCTTTTATTCCTTATATGGGCTAGTGGGTTTTGACATATTAAGGATTTGTTGAGTCAATGTATTCAACTTTCCTGTGCTGGACATACAAGATTCCTTTTGCAGGTGTCTCCATAACATGCCATTGAAAACATCTAGTCCTTGGGAGACAAAATGTTGGCCGAGTCTTTTTCAGAGGGTCTTTGTATCCCACCAATGGGACCTGATGATCCAAATGGTGTTATTCATAAAGATGAGATCTCGGAGCAACAGGTTAATCACTCCATGGCAACTGTAGCAGATGTAATCTGTTTACCATCTAACCAGGAACCAAGGGATGTGATTCCGCATGAGGTACGGGGAAAGAGAAAGCTGTCTTCTGAACACAAGGGAAGAGTTCGGTGGACAAGTTCAGATACCCTTGTACTTGTGAATGCTAAACTAGTTGAGAAAAATATGCACTCTGCTGGTGGTGCAATAAAGAGGACGAAATCAGCCATTGAGAAATGGAGAACCATTTCGGCTCATTGTCATGACAATGGCCTTGACCGGAATGCCACTCAATGTCGGGACAGATGGAAACATATTCTACCTGACTATAAGAAGATTAGACATTATGAAAGAAATATTCCACCAGGTCATGTCAGCTACTGGAACATGACACCAAAAGAACGGATGGACAAGAGACTGCCGACTAATTATACCAAGGAACTATATGATGCAATGAATAAACATTTTGGCCAGAAAGGAAATGATGTTGGAGATATGATTATTGATACATCCGCATCAGATCATGGAACATTTGAAGATTGCCTTACACCTGCAAAGAATGTAATAATGCATGAAAATACAATGCCTGAGACACCACTTCAGAGCCCTGGTGATACCTCTACTGATAGAGATAAACAATATCCAGGGAAAAAGCGAAAATCATCATCAAAAACAGCTGGCATTAAGGCAACCTTGTCTGAGAACAATAAGATGATCATTTCAAACCTCAAGATGGCTGAGGAGGGGCGGATGAAACGTCATGAAAAATATTGTAATCTGTTTGAACGGAGAATGGAGATGGATGAGAAATATCTGAACCACCATGCAATGAATGTGCAACGGATGATCAATGTTGAAGAGCAGAAGGTGAAAGCACAACGTGACTTGGTATCGGCATTGAATACTATTGGTCAAGCAATGTTGAAGATTTGTGAGTCCCTTGATACGAAAGATTGATTGTCTTTCTATTCTCTTTATGCATGCATATCTGCCCCTGTTTGTAACAGATGAAATAGAATTTCTTCTGCAGCCTTAGCAGTGTCTTTTAATATCTCTGCTTGTGATTCATGTGCTTAAGAGCTCTGCAACGACTCAGATGCTATCGTTGCAAACAATATTAGTGCTTCGAAAATACTCATTGTAATTTTTCAGGAATTCATACCATTGTAGCTCTAACAGTGTTCTCTTGAATCACTGGAGTAACCTTTATGTATTTATTTACTATTTCGTATTGCTTAAAAGGTTTCCATTGTTACCTTACATAAAGTTTTTGTATATCCACTACATACAATTACTGGCTGTAATTTTTTCCAGAGAAAATAATTTCACTCCACCCTCACACTCAAGTGAAGAACGGGGTTGGTGGTACTAATCCAGCCCTCATGAAGCTCCATCTCTTCTTCCCTAGAATTTTTGGATTGATCTTCCGCCACCTATGTGGCTGGTAACCCTGTGGGATACGATGATCTCGAGAGTCGAGACCTTTGTGGGTCCAGCATGGGCATCTACTAATTGAACTAACCTGGCATCTACTAATTGAGCTAACCTGCTAACCCTTCGGGTTAATTTACTGGATTCTATATAATATATATGATCTTGATTTTAACACCTACAC

Ace file of the UniGene sp_v1.1_unigene18196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydroxyproline-rich glycoprotein family protein	-	-	3.0e-19	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP7

Fln msg:

Fln protein: MLAESFSEGLCIPPMGPDDPNGVIHKDEISEQQVNHSMATVADVICLPSNQEPRDVIPHEVRGKRKLSSEHKGRVRWTSSDTLVLVNAKLVEKNMHSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNIPPGHVSYWNMTPKERMDKRLPTNYTKELYDAMNKHFGQKGNDVGDMIIDTSASDHGTFEDCLTPAKNVIMHENTMPETPLQSPGDTSTDRDKQYPGKKRKSSSKTAGIKATLSENNKMIISNLKMAEEGRMKRHEKYCNLFERRMEMDEKYLNHHAMNVQRMINVEEQKVKAQRDLVSALNTIGQAMLKICESLDTKD*

Protein Length: 352

Fln nts: ATGGGGATGGTCACATGGGTGGCTCTCTCTTCGAGGTTCAGTAAATTGTCGTTCCCTTTGGTCACTTAGTTTTTTCATTTAGCATCATTACTGCTCGCTACACTTATACCCACTTTTCTTCCCTCTTGTTCTTTGAGCTGCTCATGGGGTCTGTGCGTGTGCCCGTTAGATGAATTTACGAATTTGGTTTTGGTTGAAATGCAGTCATGACGGTTCAATGGGAACAAAGCACAATACCCCCATTGTGATTGGGGTCCCGAAGGTTAAAATTTTGGGGTTCTGCACGGGAATCGATCCTGTGACTGCCTGTTGGCAATTGATACTTGTTGTGCAATACCCCATTTATGAATACAGCAAGAATGCCTTGAATGCTTCTGCTTACATGGCAGAGCTGTTTTATTGAGGGGTTTCGCCATTCACTGTGGAGAATCTCCAAAATCTTCCATTCGCTGACGCAGAACCTGCCCCAGTACGAGACTGTTGCTTTTATTCCTTATATGGGCTAGTGGGTTTTGACATATTAAGGATTTGTTGAGTCAATGTATTCAACTTTCCTGTGCTGGACATACAAGATTCCTTTTGCAGGTGTCTCCATAACATGCCATTGAAAACATCTAGTCCTTGGGAGACAAA_-_ATGTTGGCCGAGTCTTTTTCAGAGGGTCTTTGTATCCCACCAATGGGACCTGATGATCCAAATGGTGTTATTCATAAAGATGAGATCTCGGAGCAACAGGTTAATCACTCCATGGCAACTGTAGCAGATGTAATCTGTTTACCATCTAACCAGGAACCAAGGGATGTGATTCCGCATGAGGTACGGGGAAAGAGAAAGCTGTCTTCTGAACACAAGGGAAGAGTTCGGTGGACAAGTTCAGATACCCTTGTACTTGTGAATGCTAAACTAGTTGAGAAAAATATGCACTCTGCTGGTGGTGCAATAAAGAGGACGAAATCAGCCATTGAGAAATGGAGAACCATTTCGGCTCATTGTCATGACAATGGCCTTGACCGGAATGCCACTCAATGTCGGGACAGATGGAAACATATTCTACCTGACTATAAGAAGATTAGACATTATGAAAGAAATATTCCACCAGGTCATGTCAGCTACTGGAACATGACACCAAAAGAACGGATGGACAAGAGACTGCCGACTAATTATACCAAGGAACTATATGATGCAATGAATAAACATTTTGGCCAGAAAGGAAATGATGTTGGAGATATGATTATTGATACATCCGCATCAGATCATGGAACATTTGAAGATTGCCTTACACCTGCAAAGAATGTAATAATGCATGAAAATACAATGCCTGAGACACCACTTCAGAGCCCTGGTGATACCTCTACTGATAGAGATAAACAATATCCAGGGAAAAAGCGAAAATCATCATCAAAAACAGCTGGCATTAAGGCAACCTTGTCTGAGAACAATAAGATGATCATTTCAAACCTCAAGATGGCTGAGGAGGGGCGGATGAAACGTCATGAAAAATATTGTAATCTGTTTGAACGGAGAATGGAGATGGATGAGAAATATCTGAACCACCATGCAATGAATGTGCAACGGATGATCAATGTTGAAGAGCAGAAGGTGAAAGCACAACGTGACTTGGTATCGGCATTGAATACTATTGGTCAAGCAATGTTGAAGATTTGTGAGTCCCTTGATACGAAAGATTGA___TTGTCTTTCTATTCTCTTTATGCATGCATATCTGCCCCTGTTTGTAACAGATGAAATAGAATTTCTTCTGCAGCCTTAGCAGTGTCTTTTAATATCTCTGCTTGTGATTCATGTGCTTAAGAGCTCTGCAACGACTCAGATGCTATCGTTGCAAACAATATTAGTGCTTCGAAAATACTCATTGTAATTTTTCAGGAATTCATACCATTGTAGCTCTAACAGTGTTCTCTTGAATCACTGGAGTAACCTTTATGTATTTATTTACTATTTCGTATTGCTTAAAAGGTTTCCATTGTTACCTTACATAAAGTTTTTGTATATCCACTACATACAATTACTGGCTGTAATTTTTTCCAGAGAAAATAATTTCACTCCACCCTCACACTCAAGTGAAGAACGGGGTTGGTGGTACTAATCCAGCCCTCATGAAGCTCCATCTCTTCTTCCCTAGAATTTTTGGATTGATCTTCCGCCACCTATGTGGCTGGTAACCCTGTGGGATACGATGATCTCGAGAGTCGAGACCTTTGTGGGTCCAGCATGGGCATCTACTAATTGAACTAACCTGGCATCTACTAATTGAGCTAACCTGCTAACCCTTCGGGTTAATTTACTGGATTCTATATAATATATATGATCTTGATTTTAACACCTACAC

Fln Alignment:

sp_v1.1_unigene18196___MLAESFSEGLCIPPMGPDDPNGVIHKDEISEQQVNHSMATVADVIC-LPSNQEPRDVIPHEVRGKRKLSSEHKGRVRWTSSDTLVLVNAKLVEKNMHSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNIPPGHVSYWNMTPKERMDKRLPTNYTKELYDAMNKHFGQKGNDVGDMIIDTSASDHGTFEDCLTPAKNVIMHENTMPETPLQSPGDTSTDRDKQYPGKKRKSSSKTAGIKATLSENNKMIISNLKMAEEGRMKRHEKYCNLFERRMEMDEKYLNHHAMNVQRMINVEEQKVKAQRDLVSALNTIGQAMLKICESLDTK
B8LKP7_______________MLAEPFSEGLCIPPMGPDDPNGVIHKDEISEQQPNHPMTTVAEVICCLPSSQDPRDVTPHEVRGKRKLSSEHKGRVRWTSSDTLVLVNAKLVEKNMHSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNIPPGHVSYWNMTPKERMDKRLPTNYTKELYDAMNKHFGQKGNDVGDMIIDTSASDHGTFEDCLTPAKNVIMHENSMPETPLQSPGDTSSDRDKQYPGKKRKAASKSAGIKATLSENNKMIISNLKMAEEGRMKRHEKYCNLFERRMEMDEKYLNHHAMNVQRMINVEEQKVKAQRDLVSALNTIGQAMLKICESLDTK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
86	66		33		0.997452
89	66		33		0.997452
91			33	66	0.997452
95		33	66		0.997452
96		66		33	0.997452
98		33	66		1.0
100		66		33	0.997452
102	66			33	0.997452
107		33		66	0.997452
131	16			83	0.994512
133		83	16		0.994512
134			16	83	0.994512
135			16	83	0.994512
136			16	83	0.994512
155	14		85		0.993533
158		85	14		0.993533
160			14	85	0.993533
175	42		57		1.0
265			20	80	0.995493
309		85	14		0.993533
330		14		85	0.993533
837	88		11		0.923564
1814	87		12		0.992554
1830			85	14	0.993533
1892	85	14			0.993533
1893			14	85	0.993533
1896	85		14		0.993533
1901	85			14	0.993533
1903			14	85	0.993533
1905		14		85	0.993533
1906	85			14	0.993533
1911	14			85	0.993533
1912	85	14			0.993533
1913	85			14	0.993533
1951	11	5		82	0.999919
1974		12		87	0.992554
2107		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain