SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18195

Length: 1479 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18195

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein translocase, putative n=1 Tax=Ricinus communis RepID=B9S0U8_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	79%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	79%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	vacuole	GO:0005773	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE34

Fln msg: your sequence is longer than subject: 254 - 194

Fln protein: MESGKALMEVPKGPIAQLQYKFKELDNGFKTWLSRQTAPVDVAVTTATSAIQGGAIGALMGTLTSDISSTLPTQPNGVNPQAMASLKQAQAFTGGPLLQARNFAVMTGVNAGITCAMKRLRGGVEDVQTSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGQKFSQPAPEENYYAQTKSMLSKLGLQTYEKNFKKGLLTDNTLPLLTDSALRDVKIPPGPRLLILDHIQRDPDAEWRGKQ*

Protein Length: 255

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCAAACCCAACACCCTTGGGAAGATAAACCCGATTGCGATCATGAGAGGGTTGGGGAGCACCTACCCTAGTATTGCTGGTTCCTATTTTCTCACATTTAGCTTCAATTTATGCGTTTTTGTCTGAAATACCACATGTAGACTACATGCACAGATTCAGGGCTCTGAAGCAAAACTATCCCTCTTATTAGGTGGATACAGAAGCGAACCTCACATATTCCTCCTCTCCTGAAAACTGAA_-_ATGGAAAGCGGTAAGGCATTAATGGAAGTGCCAAAGGGACCTATTGCGCAGTTGCAGTACAAGTTCAAGGAACTCGACAATGGATTCAAGACATGGCTGAGCAGGCAGACTGCACCAGTCGATGTGGCTGTGACCACTGCCACAAGTGCAATACAGGGAGGAGCCATTGGGGCTTTAATGGGTACTCTTACTTCAGATATATCATCTACTCTACCAACCCAACCAAACGGGGTCAATCCTCAAGCCATGGCTTCACTCAAGCAGGCCCAGGCATTTACAGGTGGGCCACTTTTGCAAGCTCGGAACTTTGCAGTTATGACTGGTGTTAATGCAGGTATCACATGTGCAATGAAAAGGCTACGTGGTGGGGTTGAGGATGTTCAAACCAGTATGGTTGCAGCATTTGGTTCAGGAGCAATGTTCTCACTGGTAAGTGGCATGGGGGGACCAAATCAGGCAGCAAATGCGGTTACCTCTGGTCTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCAAGTTAGGCCAAAAGTTCTCTCAGCCAGCTCCTGAAGAAAATTATTACGCCCAAACGAAATCCATGTTATCCAAACTTGGGCTTCAAACTTACGAAAAGAATTTCAAGAAGGGTTTGCTTACCGACAATACCCTGCCTCTTTTGACGGACAGTGCCCTAAGAGATGTAAAAATCCCTCCTGGACCAAGGCTTCTCATTCTTGACCATATTCAAAGGGATCCAGATGCAGAGTGGAGGGGAAAGCAGTAG___AATGTCCCATTACCGGATCCAAGGTTCTCAAGGAGGATGAAGGACCCGCTTATGCTTTTCAATTCTGCACATTGAATTTTGATATTATATTATCTGGGTAATGTTACGAATATTTCAATATATAACTGGTTCTGTTATTTTCTCTTCACTCGTCATAGGAGTGGCTTCTGTGGTAGTCAGAGAAATTTTATATTCAAAGAAATTGTCTGGAGAGACTTCGTACTTAAGATTCAACAAGTAGGGAACGCCTGCATGTGTTTCAGGCTTTCAGTATACACAATAATTTGTACGACACATGATTTTTAACTGTCGAGGCAATGGTTATATGTTCTTTTTTGGTCACTCAGGATTAGGGATACCGTTACTGCTCGTGTCAAAATTATCTCTTCGATGCCTTATAATCCTGTACTGGAAATGGTTATAACATTTAAAAACTGCTTTGGTGAATTTT

Fln Alignment:

sp_v1.1_unigene18195___MGTLTSDISSTLPTQPNGVNPQAMASLKQAQAFTGGPLLQARNFAVMTGVNAGITCAMKRLRGGVEDVQTSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGQKFSQPAPEENYYAQTKSMLSKLGLQTYEKNFKKGXXXXXXXXXXXXSALRDVKIPPGPRLLILDHIQRDPDAEWRGKQ
D5AE34_______________MGTLTSDISSTLPTQPNGVNPQAMASLKQAQAFTGGPLLQARNFAVMTGVNAGITCAMKRLRGGVEDVQTSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGQKFSQPSTEENYYVKTKSMLSKLGLQNYEKNFKKGLLTDNTLPLLTDSALRDVKIPPGPRLLILDHIQRDPEAEWKGKQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
95		87	12		0.992554
97	87	12			0.992554
107	12		87		0.992554
108		12		87	0.992554
111	12	87			0.992554
242		23		76	1.0
500		75		25	1.0
872		80	6	13	0.999961
965	88			11	0.999937
966	88			11	0.999937
1335		55		45	1.0
1360		10		90	0.90298
1366			88	11	0.923564
1372			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain