SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18192

Length: 2184 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18192
ATGGGATGATAAAGATAAATGACGCGGAAGCGAGTGAATGGTGGCTGGGAAACGCACATACAGGCGCAGGGTAGGGAAGAAGGCATGAGTATTGTGTGGGTATGGCTATTGGAGGGCTCATCGGTTCCTACAGCCTTCCCTGTCTTCTACGTGCTCCACACCGACTCCTAGTCTTCTCTTCTTCCATTATTATCGGACGCAGGTGCGATTGCAATATCATTGAAACGCGAGATCGTCCTTCAGTATCAGCAGGGACTGGGCCTCCGAGTTCAGGACCCTCATCAACAAATCATCATCTATATGCTATTCAAGACCACCTATCTCTAAAGCCATCTAGCTGTCTCTGGAACTCTGAGGTGCAACACATATTCTCAAAATTTTCCTTTATCAAAAGTAGGAGCCATCAAAGCATCAGAGGATCAGAAGCAATGGGTACCAATGCTGCTCATTCTCTAGAGCATATGCATGATCCAGAATCTATATCATACCTTTCGCAGGAAGATGCAATAGCTATTGATGAACTTCTTATGGGTCCTCTTGGATTTAGTGTGGACCAATTGATGGAGCTTGCTGGCCTTAGTGTTGCAACCTCCATAGCAGAGGTTTACAAGCCAGATGACTACAGTCGGGTTCTAATCATTTGTGGTCCTGGAAACAATGGTGGTGATGGACTTGTGGCTACACGCCACCTTTATCATTTTGGATACACACCATTTGTTTGTTATCCAAAACGTACAAATAAACCTCTTTATCATGGCCTTGTTACTCAGCTAGAAGCACTTGCTGTTCCATTCTTGTCACCGGAGGAGTTACCAGCACAACTGGCCAGCAATTTTGACATTGTAGTGGATGCAATGTTTGGGTTTTCATTCCATGGTACACCAAGGCCTCCTTTTGATGCTCTCATCCGCCAACTATTGGTACCATCTGGTTTCACTCGAGAAAATTGTGGACTACCTATCATTGTGTCTATAGACATTCCTTCAGGATGGCATGTTGAACAAGGAGACATTGAAGGGACAGGTCTTCGACCAGACATGCTGGTGTCTTTAACTGCACCAAAACTCTGTGCTAGAAAATTGACAGGCTCACATCACTTTCTAGGGGGTAGGTTTGTGCCACCAGAAGTTGCAAATAGGTACTCGTTACGGCTTCCTAAATATCCAGGTACTGCGATGTGTGTGCGCATTGGAAAGCCCCTGTCAGTTGATGTGGCTTCTCTTCGAGAAAACTATGTTTCTCCAGATTTTCTTGAGGAGAACGTGAAGGATAATCCAATTAAGCAATTTCAAGAATGGTTTGATGATGCAGTAGCTGCTGGCTTGCGTGAACCAAATGCAATGGCCTTGGCAACTGCCGATAAAGATGGTCATCCTTCTGTACGCATGGTCCTGCTCAAAGGTTTTGATGAGCGTGGATTTGTTTGGTATACAAACTATGGAAGTCGGAAGGCACTTGAAATACTTGAAAATCCTCATGCTTCTCTTCTTTTCTTTTGGGAAGCCCTTCATCGCCAGGTAAGAATAGAGGGATCTGTAGAGAAAGTTCCTGAAGAAGAATCAGATGAGTACTTTCATAGCCGCCCACGTGGAAGTCAAATAGGTGCACTAGTCAGTAACCAGAGCTCAGTGATACCTGGGAGACATGTCCTCCATCAAGCGTACAGTGAGCTGCAAGCCAAATATACAGATGGAAAGCTGATTCCAAGGCCTGAGCACTGGGGTGGTTACCGGTTAAAACCAAAAGCTATTGAATTTTGGCAAGGACAACCGTCACGGCTACATGATAGGTTGCTCTACTCAAGAACTGAGATCAACGGAAAGCAAAATTGGAAGATTGAACGGTTGGCTCCATAGCTTGACTCTCCTAGTTTTTTCTGCAGCAAGAGTTCATCAAAATCTTTGTCTAAGCGTAGACTTTAATGTTGAAGTCTATGGAGCTATATCAAGCTGTTGTAAAGCTATTTTCTGATGCTTCAAAACTTTGACATGAAACTGTACATATATATATATATATATATATTTTTTATATATTGTACAAATTACTGTGGCTTCATAAGCCTGCTAAAACCGCTTCTCCTTTGAGATAAGTTCAGTTTGCAGCCAAGATTTCACTGGCTGGAATGGTTGATTGATTGATTTTAATGCTGACTAAGCTGAACAGTCTAAGGGACTAAGGGAATAA

Ace file of the UniGene sp_v1.1_unigene18192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pyridoxamine 5-phosphate oxidase, putative (EC:1.4.3.5)	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	at5g49970 k9p8_11	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxal 5'-phosphate synthase.	EC:1.4.3.5	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	pyridoxal metabolic process	GO:0042817	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	pyridoxine biosynthetic process	GO:0008615	Biological Process	81%
Blast2go	pyridoxamine-phosphate oxidase activity	GO:0004733	Molecular Function	81%
Blast2go	FMN binding	GO:0010181	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxamine 5'-phosphate oxidase	IPR000659	-	81%
Blast2go	YjeF-related protein, N-terminal	IPR004443	-	81%
Blast2go	FMN-binding split barrel-related	IPR009002	-	81%
Blast2go	Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain	IPR011576	-	81%
Blast2go	FMN-binding split barrel	IPR012349	-	81%
Blast2go	Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal	IPR019576	-	81%
Blast2go	Pyridoxamine 5'-phosphate oxidase, conserved site	IPR019740	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW29

Fln msg: your sequence is longer than subject: 585 - 333

Fln protein: MAIGGLIGSYSLPCLLRAPHRLLVFSSSIIIGRRCDCNIIETRDRPSVSAGTGPPSSGPSSTNHHLYAIQDHLSLKPSSCLWNSEVQHIFSKFSFIKSRSHQSIRGSEAMGTNAAHSLEHMHDPESISYLSQEDAIAIDELLMGPLGFSVDQLMELAGLSVATSIAEVYKPDDYSRVLIICGPGNNGGDGLVATRHLYHFGYTPFVCYPKRTNKPLYHGLVTQLEALAVPFLSPEELPAQLASNFDIVVDAMFGFSFHGTPRPPFDALIRQLLVPSGFTRENCGLPIIVSIDIPSGWHVEQGDIEGTGLRPDMLVSLTAPKLCARKLTGSHHFLGGRFVPPEVANRYSLRLPKYPGTAMCVRIGKPLSVDVASLRENYVSPDFLEENVKDNPIKQFQEWFDDAVAAGLREPNAMALATADKDGHPSVRMVLLKGFDERGFVWYTNYGSRKALEILENPHASLLFFWEALHRQVRIEGSVEKVPEEESDEYFHSRPRGSQIGALVSNQSSVIPGRHVLHQAYSELQAKYTDGKLIPRPEHWGGYRLKPKAIEFWQGQPSRLHDRLLYSRTEINGKQNWKIERLAP*

Protein Length: 586

Fln nts: ATGGGATGATAAAGATAAATGACGCGGAAGCGAGTGAATGGTGGCTGGGAAACGCACATACAGGCGCAGGGTAGGGAAGAAGGCATGAGTATTGTGTGGGT_-_ATGGCTATTGGAGGGCTCATCGGTTCCTACAGCCTTCCCTGTCTTCTACGTGCTCCACACCGACTCCTAGTCTTCTCTTCTTCCATTATTATCGGACGCAGGTGCGATTGCAATATCATTGAAACGCGAGATCGTCCTTCAGTATCAGCAGGGACTGGGCCTCCGAGTTCAGGACCCTCATCAACAAATCATCATCTATATGCTATTCAAGACCACCTATCTCTAAAGCCATCTAGCTGTCTCTGGAACTCTGAGGTGCAACACATATTCTCAAAATTTTCCTTTATCAAAAGTAGGAGCCATCAAAGCATCAGAGGATCAGAAGCAATGGGTACCAATGCTGCTCATTCTCTAGAGCATATGCATGATCCAGAATCTATATCATACCTTTCGCAGGAAGATGCAATAGCTATTGATGAACTTCTTATGGGTCCTCTTGGATTTAGTGTGGACCAATTGATGGAGCTTGCTGGCCTTAGTGTTGCAACCTCCATAGCAGAGGTTTACAAGCCAGATGACTACAGTCGGGTTCTAATCATTTGTGGTCCTGGAAACAATGGTGGTGATGGACTTGTGGCTACACGCCACCTTTATCATTTTGGATACACACCATTTGTTTGTTATCCAAAACGTACAAATAAACCTCTTTATCATGGCCTTGTTACTCAGCTAGAAGCACTTGCTGTTCCATTCTTGTCACCGGAGGAGTTACCAGCACAACTGGCCAGCAATTTTGACATTGTAGTGGATGCAATGTTTGGGTTTTCATTCCATGGTACACCAAGGCCTCCTTTTGATGCTCTCATCCGCCAACTATTGGTACCATCTGGTTTCACTCGAGAAAATTGTGGACTACCTATCATTGTGTCTATAGACATTCCTTCAGGATGGCATGTTGAACAAGGAGACATTGAAGGGACAGGTCTTCGACCAGACATGCTGGTGTCTTTAACTGCACCAAAACTCTGTGCTAGAAAATTGACAGGCTCACATCACTTTCTAGGGGGTAGGTTTGTGCCACCAGAAGTTGCAAATAGGTACTCGTTACGGCTTCCTAAATATCCAGGTACTGCGATGTGTGTGCGCATTGGAAAGCCCCTGTCAGTTGATGTGGCTTCTCTTCGAGAAAACTATGTTTCTCCAGATTTTCTTGAGGAGAACGTGAAGGATAATCCAATTAAGCAATTTCAAGAATGGTTTGATGATGCAGTAGCTGCTGGCTTGCGTGAACCAAATGCAATGGCCTTGGCAACTGCCGATAAAGATGGTCATCCTTCTGTACGCATGGTCCTGCTCAAAGGTTTTGATGAGCGTGGATTTGTTTGGTATACAAACTATGGAAGTCGGAAGGCACTTGAAATACTTGAAAATCCTCATGCTTCTCTTCTTTTCTTTTGGGAAGCCCTTCATCGCCAGGTAAGAATAGAGGGATCTGTAGAGAAAGTTCCTGAAGAAGAATCAGATGAGTACTTTCATAGCCGCCCACGTGGAAGTCAAATAGGTGCACTAGTCAGTAACCAGAGCTCAGTGATACCTGGGAGACATGTCCTCCATCAAGCGTACAGTGAGCTGCAAGCCAAATATACAGATGGAAAGCTGATTCCAAGGCCTGAGCACTGGGGTGGTTACCGGTTAAAACCAAAAGCTATTGAATTTTGGCAAGGACAACCGTCACGGCTACATGATAGGTTGCTCTACTCAAGAACTGAGATCAACGGAAAGCAAAATTGGAAGATTGAACGGTTGGCTCCATAG___CTTGACTCTCCTAGTTTTTTCTGCAGCAAGAGTTCATCAAAATCTTTGTCTAAGCGTAGACTTTAATGTTGAAGTCTATGGAGCTATATCAAGCTGTTGTAAAGCTATTTTCTGATGCTTCAAAACTTTGACATGAAACTGTACATATATATATATATATATATATTTTTTATATATTGTACAAATTACTGTGGCTTCATAAGCCTGCTAAAACCGCTTCTCCTTTGAGATAAGTTCAGTTTGCAGCCAAGATTTCACTGGCTGGAATGGTTGATTGATTGATTTTAATGCTGACTAAGCTGAACAGTCTAAGGGACTAAGGGAATAA

Fln Alignment:

sp_v1.1_unigene18192___MFGFSFHGTPRPPFDALIRQLLVPSGFTRENCGLPIIVSIDIPSGWHVEQGDIEGTGLRPDMLVSLTAPKLCARKLTGSHHFLGGRFVPPEVANRYSLRLPKYPGTAMCVRIGKPLSVDVASLRENYVSPDFLEENVKDNPIKQFQEWFDDAVAAGLREPNAMALATADKDGHPSVRMVLLKGFDERGFVWYTNYGSRKALEILENPHASLLFFWEALHRQVRIEGSVEKVPEEESDEYFHSRPRGSQIGALVSNQSSVIPGRHVLHQAYSELQAKYTDGKLIPRPEHWGGYRLKPKAIEFWQGQPSRLHDRLLYSRTEINGKQNWKIERLAP
A9NW29_______________MFGFSFHGTPRPPFDALIRRLAVPSGFTRENCGLPVIVSVDIPSGWHVEQGDIEGTGLRPDMLVSLTAPKLCARKLTASHHFLGGRFVPPELAKKYSLQLPKYPGTAMCVRIGKPLSVDVASLRENYVSPELLEENVKDDPIKQFQEWFDDAVAAGLREPNAMALATADKDGHPSERMVLLKGFDEHGFVWYTNYESRKAHEIHENPYASLLFFWEALHRQVRIEGSVEKVPEEESDEYFHSRPRGSQIGALVSNQSSVIPGRHVLHHAYNELQAKYIDGKLIPRPKHWGGYRLKPNTVEFWQGQMSRLHDRLLYSRTEINGKQKWKIERLAP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
71			75	25	0.996473
75		25	75		0.996473
76		25	75		0.996473
77			75	25	0.996473
78	80			20	0.995493
79	80		20		0.995493
81	80	20			0.995493
82	80			20	0.995493
84			80	20	0.995493
89		20	80		0.995493
226	37		62		1.0
290	77			11	0.968132
291	88	11			0.923564
344		33		66	1.0
383			80	20	0.995493
411	90			10	0.90298
421	10		90		0.90298
424		90	10		0.90298
427	90	10			0.90298
434			90	10	0.90298
442	90			10	0.90298
447			90	10	0.90298
450		90	10		0.90298
620			37	62	1.0
761		25	75		0.996473
764	25			75	0.996473
1001	16			83	0.994512
1005	83		16		0.994512
1006		83	16		0.994512
1186	33		66		0.997452
1316	80			20	0.999996
1319	80	20			0.999996
1320	22		77		0.999999
1323		22	77		0.999999
1324	22	77			0.999999
1328		66		33	1.0
1462	33			66	1.0
1922	75		25		0.996473
1933	33		66		1.0
1941		33		66	1.0
1950	87		12		0.992554
1951			12	87	0.992554
1962		25		75	1.0
2005		20		80	0.995493
2006	80			20	0.995493
2020	80		20		0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
2001	2022	AT AT AT AT AT AT AT AT AT AT AT	22
2127	2140	TTGA TTGA TTGA TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain