SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18181

Length: 268 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene18181
AGTGCGCGGTGTGTCTGTCCGAATTCGAGGAAAATGAGAAAGGCCGTGTTCTGCCAAATTGCAGACATAGTTTTCATGTCGAATGCATAGACATGTGGTTTCGTTCGCATTCCACTTGTCCCATTTGCAGAACAGGCGCCCAGCAGGAACAGCCAGTTTCAGAATCCTCTAGAGTCGAGCAGGTTTCGGTTACAATCCCAGGACCAATTACTTCAGGCTTCCAAGACAATCTGAATTTGCAGCCAGAGCAGAGTGTAAGCTAGTAGGA

Ace file of the UniGene sp_v1.1_unigene18181

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring finger protein, putative	-	-	9.0e-18	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	ring zinc finger	-	-	1.03709e-26	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	1.03709e-26	90%
Blast2go	defense response	GO:0006952	Biological Process	1.03709e-26	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.03709e-26	90%
Blast2go	protein binding	GO:0005515	Molecular Function	1.03709e-26	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.03709e-26	90%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.03709e-26	90%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.03709e-26	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P249

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 93 aas, your sequence is shorter than subject: 87 - 292

Fln protein: CAVCLSEFEENEKGRVLPNCRHSFHVECIDMWFRSHSTCPICRTGAQQEQPVSESSRVEQVSVTIPGPITSGFQDNLNLQPEQSVS*

Protein Length: 88

Fln nts: AGTGCGCGGTGTGTCTGTCCGAATTCGAGGAAAATGAGAAAGGCCGTGTTCTGCCAAATTGCAGACATAGTTTTCATGTCGAATGCATAGACATGTGGTTTCGTTCGCATTCCACTTGTCCCATTTGCAGAACAGGCGCCCAGCAGGAACAGCCAGTTTCAGAATCCTCTAGAGTCGAGCAGGTTTCGGTTACAATCCCAGGACCAATTACTTCAGGCTTCCAAGACAATCTGAATTTGCAGCCAGAGCAGAGTGTAAGCTAGTAGGA

Fln Alignment:

sp_v1.1_unigene18181___CAVCLSEFEENEKGRVLPNCRHSFHVECIDMWFRSHSTCPICRTGAXXXXXXXXXXXXXXXXXTIPGPITSGFQDNLNLQPEQS
A9P249_______________CAVCLCEFEDNEKARLLPNCGHSFHVECIDMWFRSHSTCPVCRTGAQPEQPVLESARVEQVSVTIPGPITSGFHDNPNLEQDQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain