SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18164

Length: 2435 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18164
CGTCGAGAACTGGTGGTACAAAGAGTGGCAGTTGGTTGTGATGATGGTGCTGTTCGCATTTATGTTGTTCATGAGGAAGGCATGGAATATTACAGGTCATTTCCAAGAGTTGAAGGGAAAATTTTGAGTGTTGTTTGGAGTTTGGATGCAAAGAAAATATTTGCAGGAGGTTCTGATGGTTGTATTAGGTGTTGGGATATCACAACATTCAATGAAGTATACAGGATAACAGCTGGTCTTGGAGGTTTGGGCAGTGGGCCAGACCTCTGTATCTGGTCTCTTCTTGTCCTACGAGATGGAACTCTTGTCAGTGGAGATAGTACTGGAAGTACTCAATTTTGGGATGCTCACCAAGGAACTTTATTACAAGCCCTGACATATCACAAGGGGGATGTTTTGGCATTGGCTGCAACACCGAGCCATCAGGGTGTATTTTCTGCTGGTTCTGATAGTCAGGTAATAAGCTATAAATTTGTTCCCGAGAGGATTGAATCTGTTAAAAATACTGTTGAAGACTTAGCTGATTGTGCTGGGAATCGTTGGGTCTTTGTTGGTAGCAACCGGGTGCATACGCATGATGTTAGGGCTTTGACTGTGGCAACACCTCTGATCTCTGAACAAGGTGAGCTTCTTGGTGCTCCAAGTCGGAAGAAACGCAGATATGGAAAGCCATTGGGAATGGATTATCAGAAATGGGCTCTCCCAGGAGTTCCAATGCTTATTTCAGGGGGTGACGACACAAAACTTTTTGCATATCCTGCCAATACATTCCTTGATTTTTATCCACATGATATTTGTCCAGCACCTCAACGATTATTTATGCAGCTGGCTTGTGAACCAAAAGTCGGGGGATGTCCTATAATGTTGACACAGTATGCAAGTTGGTTGGATGTGTCAATGATAAACGTAGGTATGCGTAATGATCTCAAGGCCAAAACTATGGATATCAAGCTTGGCAAGAGAAAGGGAAGATCTGAGTTTCCAGACAAAAGAGAAAAGCATCTTCTGACGGGTAACCCGTCAAAGCTATTGGCCAGAATAAAGTGCAAAGCGTCTCAGCGTATTATTTGTAGTGCAATATCTGAAACGGGAAATTTAATTGCATTTTCTGATCGTATTAAACCCAGGCTGTTTGAATTGAAAATGAAATTGTCAACAAAATGTGAAGGTGGCAAAGGTGGATGGAAAATTAAGAAGCGTCATCTACCACAGAGTTTGTTACCTGCTCATAGTATGGTTTTTAGTGCTGATTCTACACGGCTATTAATTGCATGTTATGATAGAAAGATACATGTTGTCGATGTTGAAAACAAGGAATTATTGCATACATTTGATCCATTTACCATGGATCGTCGGGGGCAGACAATGTCAAGGCCACCCATAACAAGGTTGTATGCTAGTGGTGATGGGCAATGGTTGGCTGCCATAAATTGTTGTGGAGACATTGATATATTCAACTTGGAGATTCTTAGGCAACATTGGCATATTTCCAGGTTGGATGGAGCAGGCGTGACGGCTGCTGGATTTCACCCTAGCAATAAAAATGTTCTTGTAGTTACAACATCTTCCAATCATGTATACGTGTTAGATGTAGATGCAAAACAACTAGGAGAGTGGTCAAAACGTTTTACATTTGGCCTTCCAAAGCGTTTCTTAGAATTTCCTGGTGGAATTATTGGTTTGTCATTTCCACCATCTCCAAAAGCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAAGAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGCAATCTCAGTATTGGGAAGGTTCTGTTGATTCCATTCTTATTTGGAATCATCAAGAGTTGTATTCCAACAGAGTTAATCTTATGTGGAAATTGCCAGGGGCGGTAAGCAAATGGTGGTTCGCTTATATTTGGGCATTGTGCTCTAGCAGTTCTGACGGTTCTTGTTTTTTCAATGCACACAACGTATAGAAATCACCACTGGTAATAATTTCTTTCTCAACGATTTTTGTCCTCTGATCACTTCCTAAGATAATAGCAAATTATTTTCAGGGTTCTTAGATTCTAGATGATTATTTAGATTTACACAATTGCTTTTTGTCCCCATCGAGA

Ace file of the UniGene sp_v1.1_unigene18164

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin family protein / WD-40 repeat family protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	63%
Blast2go	Quinonprotein alcohol dehydrogenase-like	IPR011047	-	63%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	63%
Blast2go	WD40-repeat-containing domain	IPR017986	-	63%
Blast2go	WD40 repeat, subgroup	IPR019781	-	63%
Blast2go	WD40 repeat 2	IPR019782	-	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC50

Fln msg: your sequence is longer than subject: 679 - 221

Fln protein: RRELVVQRVAVGCDDGAVRIYVVHEEGMEYYRSFPRVEGKILSVVWSLDAKKIFAGGSDGCIRCWDITTFNEVYRITAGLGGLGSGPDLCIWSLLVLRDGTLVSGDSTGSTQFWDAHQGTLLQALTYHKGDVLALAATPSHQGVFSAGSDSQVISYKFVPERIESVKNTVEDLADCAGNRWVFVGSNRVHTHDVRALTVATPLISEQGELLGAPSRKKRRYGKPLGMDYQKWALPGVPMLISGGDDTKLFAYPANTFLDFYPHDICPAPQRLFMQLACEPKVGGCPIMLTQYASWLDVSMINVGMRNDLKAKTMDIKLGKRKGRSEFPDKREKHLLTGNPSKLLARIKCKASQRIICSAISETGNLIAFSDRIKPRLFELKMKLSTKCEGGKGGWKIKKRHLPQSLLPAHSMVFSADSTRLLIACYDRKIHVVDVENKELLHTFDPFTMDRRGQTMSRPPITRLYASGDGQWLAAINCCGDIDIFNLEILRQHWHISRLDGAGVTAAGFHPSNKNVLVVTTSSNHVYVLDVDAKQLGEWSKRFTFGLPKRFLEFPGGIIGLSFPPSPKATAVIVHSASAMCLIDFGKPVRHDENDLTNGGSFVLDNSNNTKNALANGKMKKPNHKATLTDNNFVIVPFRDPVLFLAHLSEQSILVVEKPWVDVLQNFRAPVYRHLYGT*

Protein Length: 680

Fln nts: CGTCGAGAACTGGTGGTACAAAGAGTGGCAGTTGGTTGTGATGATGGTGCTGTTCGCATTTATGTTGTTCATGAGGAAGGCATGGAATATTACAGGTCATTTCCAAGAGTTGAAGGGAAAATTTTGAGTGTTGTTTGGAGTTTGGATGCAAAGAAAATATTTGCAGGAGGTTCTGATGGTTGTATTAGGTGTTGGGATATCACAACATTCAATGAAGTATACAGGATAACAGCTGGTCTTGGAGGTTTGGGCAGTGGGCCAGACCTCTGTATCTGGTCTCTTCTTGTCCTACGAGATGGAACTCTTGTCAGTGGAGATAGTACTGGAAGTACTCAATTTTGGGATGCTCACCAAGGAACTTTATTACAAGCCCTGACATATCACAAGGGGGATGTTTTGGCATTGGCTGCAACACCGAGCCATCAGGGTGTATTTTCTGCTGGTTCTGATAGTCAGGTAATAAGCTATAAATTTGTTCCCGAGAGGATTGAATCTGTTAAAAATACTGTTGAAGACTTAGCTGATTGTGCTGGGAATCGTTGGGTCTTTGTTGGTAGCAACCGGGTGCATACGCATGATGTTAGGGCTTTGACTGTGGCAACACCTCTGATCTCTGAACAAGGTGAGCTTCTTGGTGCTCCAAGTCGGAAGAAACGCAGATATGGAAAGCCATTGGGAATGGATTATCAGAAATGGGCTCTCCCAGGAGTTCCAATGCTTATTTCAGGGGGTGACGACACAAAACTTTTTGCATATCCTGCCAATACATTCCTTGATTTTTATCCACATGATATTTGTCCAGCACCTCAACGATTATTTATGCAGCTGGCTTGTGAACCAAAAGTCGGGGGATGTCCTATAATGTTGACACAGTATGCAAGTTGGTTGGATGTGTCAATGATAAACGTAGGTATGCGTAATGATCTCAAGGCCAAAACTATGGATATCAAGCTTGGCAAGAGAAAGGGAAGATCTGAGTTTCCAGACAAAAGAGAAAAGCATCTTCTGACGGGTAACCCGTCAAAGCTATTGGCCAGAATAAAGTGCAAAGCGTCTCAGCGTATTATTTGTAGTGCAATATCTGAAACGGGAAATTTAATTGCATTTTCTGATCGTATTAAACCCAGGCTGTTTGAATTGAAAATGAAATTGTCAACAAAATGTGAAGGTGGCAAAGGTGGATGGAAAATTAAGAAGCGTCATCTACCACAGAGTTTGTTACCTGCTCATAGTATGGTTTTTAGTGCTGATTCTACACGGCTATTAATTGCATGTTATGATAGAAAGATACATGTTGTCGATGTTGAAAACAAGGAATTATTGCATACATTTGATCCATTTACCATGGATCGTCGGGGGCAGACAATGTCAAGGCCACCCATAACAAGGTTGTATGCTAGTGGTGATGGGCAATGGTTGGCTGCCATAAATTGTTGTGGAGACATTGATATATTCAACTTGGAGATTCTTAGGCAACATTGGCATATTTCCAGGTTGGATGGAGCAGGCGTGACGGCTGCTGGATTTCACCCTAGCAATAAAAATGTTCTTGTAGTTACAACATCTTCCAATCATGTATACGTGTTAGATGTAGATGCAAAACAACTAGGAGAGTGGTCAAAACGTTTTACATTTGGCCTTCCAAAGCGTTTCTTAGAATTTCCTGGTGGAATTATTGGTTTGTCATTTCCACCATCTCCAAAAGCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAA___GAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGCAATCTCAGTATTGGGAAGGTTCTGTTGATTCCATTCTTATTTGGAATCATCAAGAGTTGTATTCCAACAGAGTTAATCTTATGTGGAAATTGCCAGGGGCGGTAAGCAAATGGTGGTTCGCTTATATTTGGGCATTGTGCTCTAGCAGTTCTGACGGTTCTTGTTTTTTCAATGCACACAACGTATAGAAATCACCACTGGTAATAATTTCTTTCTCAACGATTTTTGTCCTCTGATCACTTCCTAAGATAATAGCAAATTATTTTCAGGGTTCTTAGATTCTAGATGATTATTTAGATTTACACAATTGCTTTTTGTCCCCATCGAGA

Fln Alignment:

sp_v1.1_unigene18164___ELVVQRVAVGCDDGAVRIYVVH--EEGMEYYRSFPRVEGKILSVVWSLDAKKIFAGGSDG
D5AC50_______________ELAVQRVAIGCDDGAIRIYVVRDSEEGMEYYRSFPRVKGKILSVVWSLDAKKIFAGGSDG

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
6	66			33	0.997452
9	66	33			0.997452
15		33		66	0.997452
16			66	33	0.997452
22	66	33			0.997452
23	66			33	0.997452
24		33	66		0.997452
113		33		66	0.997452
151		75		25	0.996473
153	75			25	0.996473
154	75	25			0.996473
157	75	25			0.996473
158	75	25			0.996473
159	75			25	0.996473
161	75		25		0.996473
162			25	75	0.996473
163		25		75	0.996473
168		25	75		0.996473
169			75	25	0.996473
170	75	25			0.996473
171	25		75		0.996473
203		75	25		0.996473
218	25		75		0.996473
1722	85	14			0.993533
1723	85		14		0.993533
1727	14			85	0.993533
1730	85			14	0.993533
1731		85		14	0.993533
1732	85		14		0.993533
1736		85		14	0.993533
1737	85	14			0.993533
1739		14	85		0.993533
1840	83	16			0.994512
1925	90	10			0.90298
1926	10			90	0.90298
1927		90	10		0.90298
1928		90	10		0.90298
2112	25	75			1.0
2122	88	11			0.999937
2123			11	88	0.999937
2126	11		88		0.999937
2127		11	88		0.999937
2128	88	11			0.999937
2129	88			11	0.999937
2132		11		88	0.999937
2134		88	11		0.999937
2136		11	88		0.999937
2137	11			88	0.999937
2139		11	88		0.999937
2322		20		80	0.999996
2324		22		77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain