SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18129

Length: 2135 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18129
TTCGAATCTTGATCTGGCAGTGGGAAGCTATGGTGTGCAGCCCAACATAGGGCCAGATATCTATGGATCGTCATCAGGGGGGGAAATTGGAAACAGGTCTCTTGTTGGTCCTACAGAAGGTGAAAAACCTATGGTTGTAGAGTTAGCTGTTGCAGCCATGGAAGAATTAGTGAGAATGGCACAACTGGGGGAACCCCTATGGTCCTCACGTCCGGAGGATGGCACTGATATTCTTAATGAAGAGGAATATTCGCACCTTTCCCAGAGGCATAGGTCCGAGGCCCTATGGATTAAAGGCTGAAGCATCTCGAGAGACTGCGGTTGTAATCATGAATGCTATTAATATGGTTGAGACTCTAATGGATGTGAATCAATGGGCAAGCATGTTTCCTGGCATTGTATCACGACCAGTTACCGTGGATGTTTTTTCAACAGGCGTTGCGGGCAACTACAATGGTGCTTTGCAAGTGATGCATGCAGAGTTTCAAGTACCCTCTCCACTAGCGCCAACTCGGGAAAATTACTTCGTGAGATATTGCAAGCAGCACTCAGACACAATATGGGCTGTTGTTGATGTCTCTCTGGACAGTTTACGAGGGAATTCTTCTTCAGTGATTAGATGCCGAAGGCGACCATCTGGTTGTCTCATTCAAGAGATGCCAAATAGCTATTCTAAGGTGACTTGGGTGGAGCATGTTGAAGCTGATGACAGGGCAGTGCACCATATCTATCGTCAGCTGGTAAATTCTGGTATGGCTTTTGGTGCAAAACGATGGATAGCAACTTTGCAGAGGCAATGTGAGCGTCTAGCAAGTGTCTTGGCTAGCAATATCCCATCAAGGGACCTTGGGGTTATACCTAGCCCTGAAGGAAGAAAGAGCATACTTAAGTTAGCTGAGCGCATGGTCACAAGCTTCTGCGCTGGTGTAAGTGCATCAACTGCACATACTTGGACAACTCTGTCTGGAAGCGGTGCAGAAGACGTTCGTGTGATGACCAGAAAGAGTGTAGATGATCCAGGCAGGCCTCCCGGCATTATTCTTAGTGCTGCAACATCCCTCTGGCTGCCTGTGCCCCCCAAAAAGGTGTTTGATTTCCTTCGAGACGAAAATTCCAGGAATGAGTGGGATATCCTATCTAATGGAGGGTTGGTTCAAGAAGTCGATCACATTGCCAACGGACAAGATCCTGGGAATTGTGTATCTCTTCTACGTGTTAATACTGTGAATTCCAACCAAAGTAATATGCTTATACTTCAGGAGAGCTGCACAGATGCATCTGGGTCGTTCGTAATTTATGCTCCAGTGGATATTGTTGCCATGAATGTTGTGCTCAGTGGAGGTGACCCAGATTATGTGGCTCTTCTGCCATCTGGGTTTGCAATTTTACCAGATGGGCCAAAGTGCATAGCAGTCACCAATTCAGGCATTAACGACCTAGGCAGTGGAGGATCTTTACTCACTGTGGCTTTTCAAATTTTGGTTGACTCTGTGCCAACGGCTAAATTATCCCTGGGTTCTGTTGCAACAGTGAATAGTCTCATTTCATGCACTGTGGACAGGATTAAAGCTGCTGTTACTCGTGAGAATCCATGAAAGAGAAGTCTTCTAGCTATTCAGGTATATCTCAGGTATATCTATGTTTAAATTTAGTTGGGCAGAAGTTTGCATTCTTGCTGTCCACCTTGCAAACTTCTCATCAGAGCTGATCTTTAGATTGGGAAAACTTGAAAGATGCGAAAAACCCTAGGAATGCCTTCCCATATTCATGGATGACATTCTAGTAAACCCTTGAGCTTAGATTGGAGATTGAGTTTAGACTGAATATTTTATTGACATATGGGATATATTTTTCATGCAACAGGGAAGGGGGCTGTCTTCCTGCGAAAGTCAAGAGCGCACCACATATATACCTTGCCCTGTGGTATGGTAAGAAGCGTGCTTATGCACCTACTTCACCACTATGCAAGGGTAGTGGTTCGGGTATTGACTTTCAACCAGCTACAAAGCACAAAAAACTTGCTTATAATTGTTTGTAAAGTCAGGGATCCTTTGTATTCCTTTAATTCAAAGCCATGCAAGTTGCTTTTGTTCTTTCTGATATAAAAATCATCTCCTGCAACTCTTTTGACTTCC

Ace file of the UniGene sp_v1.1_unigene18129

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB	-	-	97%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	95%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	88%
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	88%
Blast2go	cotyledon development	GO:0048825	Biological Process	88%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	88%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipid-binding START	IPR002913	-	0.0	88%
Blast2go	START-like domain	IPR023393	-	0.0	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Overlapping hits, possible frame ERROR between 250 and 249, your sequence is shorter than subject: 532 - 763

Fln protein: SNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWSSRPEDGTDILNEEExxRTFPRGIGPRPYGLKAEASRETAVVIMNAINMVETLMDVNQWASMFPGIVSRPVTVDVFSTGVAGNYNGALQVMHAEFQVPSPLAPTRENYFVRYCKQHSDTIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPSRDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPKCIAVTNSGINDLGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVTRENP*

Protein Length: 533

Fln nts: TTCGAATCTTGATCTGGCAGTGGGAAGCTATGGTGTGCAGCCCAACATAGGGCCAGATATCTATGGATCGTCATCAGGGGGGGAAATTGGAAACAGGTCTCTTGTTGGTCCTACAGAAGGTGAAAAACCTATGGTTGTAGAGTTAGCTGTTGCAGCCATGGAAGAATTAGTGAGAATGGCACAACTGGGGGAACCCCTATGGTCCTCACGTCCGGAGGATGGCACTGATATTCTTAATGAAGAGGAAxxxxxxCGCACCTTTCCCAGAGGCATAGGTCCGAGGCCCTATGGATTAAAGGCTGAAGCATCTCGAGAGACTGCGGTTGTAATCATGAATGCTATTAATATGGTTGAGACTCTAATGGATGTGAATCAATGGGCAAGCATGTTTCCTGGCATTGTATCACGACCAGTTACCGTGGATGTTTTTTCAACAGGCGTTGCGGGCAACTACAATGGTGCTTTGCAAGTGATGCATGCAGAGTTTCAAGTACCCTCTCCACTAGCGCCAACTCGGGAAAATTACTTCGTGAGATATTGCAAGCAGCACTCAGACACAATATGGGCTGTTGTTGATGTCTCTCTGGACAGTTTACGAGGGAATTCTTCTTCAGTGATTAGATGCCGAAGGCGACCATCTGGTTGTCTCATTCAAGAGATGCCAAATAGCTATTCTAAGGTGACTTGGGTGGAGCATGTTGAAGCTGATGACAGGGCAGTGCACCATATCTATCGTCAGCTGGTAAATTCTGGTATGGCTTTTGGTGCAAAACGATGGATAGCAACTTTGCAGAGGCAATGTGAGCGTCTAGCAAGTGTCTTGGCTAGCAATATCCCATCAAGGGACCTTGGGGTTATACCTAGCCCTGAAGGAAGAAAGAGCATACTTAAGTTAGCTGAGCGCATGGTCACAAGCTTCTGCGCTGGTGTAAGTGCATCAACTGCACATACTTGGACAACTCTGTCTGGAAGCGGTGCAGAAGACGTTCGTGTGATGACCAGAAAGAGTGTAGATGATCCAGGCAGGCCTCCCGGCATTATTCTTAGTGCTGCAACATCCCTCTGGCTGCCTGTGCCCCCCAAAAAGGTGTTTGATTTCCTTCGAGACGAAAATTCCAGGAATGAGTGGGATATCCTATCTAATGGAGGGTTGGTTCAAGAAGTCGATCACATTGCCAACGGACAAGATCCTGGGAATTGTGTATCTCTTCTACGTGTTAATACTGTGAATTCCAACCAAAGTAATATGCTTATACTTCAGGAGAGCTGCACAGATGCATCTGGGTCGTTCGTAATTTATGCTCCAGTGGATATTGTTGCCATGAATGTTGTGCTCAGTGGAGGTGACCCAGATTATGTGGCTCTTCTGCCATCTGGGTTTGCAATTTTACCAGATGGGCCAAAGTGCATAGCAGTCACCAATTCAGGCATTAACGACCTAGGCAGTGGAGGATCTTTACTCACTGTGGCTTTTCAAATTTTGGTTGACTCTGTGCCAACGGCTAAATTATCCCTGGGTTCTGTTGCAACAGTGAATAGTCTCATTTCATGCACTGTGGACAGGATTAAAGCTGCTGTTACTCGTGAGAATCCATGAAAGAGAAGTCTTCTAGCTATTCAGGTATATCTCAGGTATATCTATGTTTAAATTTAGTTGGGCAGAAGTTTGCATTCTTGCTGTCCACCTTGCAAACTTCTCATCAGAGCTGATCTTTAGATTGGGAAAACTTGAAAGATGCGAAAAACCCTAGGAATGCCTTCCCATATTCATGGATGACATTCTAGTAAACCCTTGAGCTTAGATTGGAGATTGAGTTTAGACTGAATATTTTATTGACATATGGGATATATTTTTCATGCAACAGGGAAGGGGGCTGTCTTCCTGCGAAAGTCAAGAGCGCACCACATATATACCTTGCCCTGTGGTATGGTAAGAAGCGTGCTTATGCACCTACTTCACCACTATGCAAGGGTAGTGGTTCGGGTATTGACTTTCAACCAGCTACAAAGCACAAAAAACTTGCTTATAATTGTTTGTAAAGTCAGGGATCCTTTGTATTCCTTTAATTCAAAGCCATGCAAGTTGCTTTTGTTCTTTCTGATATAAAAATCATCTCCTGCAACTCTTTTGACTTCC

Fln Alignment:

sp_v1.1_unigene18129___SNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWSSRPEDGTDILNEEEYIRTFPRGIGPRPYGLKAEASRETAVVIMNAINMVETLMDVNQWASMFPGIVSRPVTVDVFSTGVAGNYNGALQVMHAEFQVPSPLAPTRENYFVRYCKQHSDTIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPSRDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPKCIAVTNSGINDLGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVTRENP
Q9FR59_______________SNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWTSHPEDSTDILNEDEYIRTFPRGIGPRPYGLKAEASRETAVVIMNAINLVETLMDVNQWSSMFPGIVSRPFTVDVFSTGVAGNYNGALQVMHAEFQVPSPLVPTREIYFVRYCKQHSDSIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPARDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSIDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDSPKCMAVTNSGINDLGTGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVMRENP

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1339	12		87		0.992554
1418		10	90		0.90298
1625			33	66	1.0
1629			16	66	0.988813
1630		66	16		0.988813
1631			20	80	0.995493
1632		80	20		0.995493
1633	80		20		0.995493
1648		20		80	0.995493
1649	80		20		0.995493
1650	80			20	0.995493
1651	80	20			0.995493
1652			20	80	0.995493
1654			20	80	0.995493
1656		20	80		0.995493
1657		20		80	0.995493
1659			80	20	0.995493
1663	80			20	0.995493
1666	80			20	0.995493
1667		20	80		0.995493
1668	20			80	0.995493
1669		20		80	0.995493
1671		20	80		0.995493
1672	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain