SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18111

Length: 1496 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18111

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Arabidopsis RepID=EIF3A_ARATH	-	-	8.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	80%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	80%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADZ5

Fln msg: Overlapping hits, possible frame ERROR between 671 and 668, your sequence is longer than subject: 343 - 286

Fln protein: MDYLERAKREEEAPLIDAAYQKHLVDDEIFFEQQQQQAIEQSRQQHVGDLVEKNRLIRMLNDKNIFQNQVVSRREGEFERLKREREERLAELRAIRKQEREMRRKMEYYRRQEEARLIKLKEEEEARKREEEERKRKQDAEWRAKLDEIAEKQKQRERELEEKERLRKEALIKEEPRVSKPSEPSTNKFVPRALRKATESAGTEADTDRWRRGDRQTNVDGxxxALPARQREADVPARDKYAPPRKYEPPTRQTGVKYEPPVSGRRDSYEPARGRDAQPPVGRYEPRSKFGGFGQKDERDRWGAGPDRERQRDEDRSGGTDNWRRPSKPDLPPSRHIEEQAA*

Protein Length: 344

Fln nts: CA_-_ATGGATTACTTGGAAAGGGCAAAAAGAGAAGAAGAAGCCCCTCTTATTGATGCAGCCTATCAAAAACACTTAGTAGATGATGAAATATTCTTCGAACAGCAACAACAGCAAGCGATTGAACAAAGCAGACAGCAACATGTTGGAGATCTTGTGGAGAAGAATAGGCTTATACGAATGTTGAATGACAAGAATATCTTTCAGAATCAAGTAGTCAGCCGACGTGAAGGAGAGTTTGAGAGACTGAAGAGAGAAAGAGAAGAGCGGCTTGCGGAGCTCCGAGCAATTAGGAAGCAGGAAAGGGAGATGCGCAGAAAAATGGAATATTATCGAAGGCAAGAGGAGGCAAGGTTGATTAAACTTAAGGAAGAGGAAGAAGCCCGCAAGCGTGAGGAGGAGGAAAGAAAACGCAAACAGGATGCGGAATGGAGAGCCAAGCTGGATGAGATTGCTGAAAAGCAGAAGCAGCGTGAAAGGGAGCTGGAGGAGAAGGAGAGGCTACGAAAAGAAGCTTTGATCAAAGAGGAACCAAGAGTTTCAAAACCCTCAGAGCCAAGTACAAACAAATTTGTTCCCCGAGCTCTGCGCAAGGCGACTGAATCTGCTGGCACTGAAGCAGATACTGATAGGTGGCGCCGTGGAGATCGGCAAACAAATGTTGATGGCxxxxxxxxxGCCCTCCCCGCTAGACAACGTGAAGCAGATGTGCCAGCGAGGGATAAGTATGCCCCTCCACGTAAATATGAGCCACCTACAAGACAAACAGGGGTTAAATACGAACCTCCAGTATCTGGAAGGCGTGATAGCTATGAACCAGCACGTGGACGGGATGCCCAACCCCCTGTTGGGCGTTACGAGCCACGATCAAAGTTTGGTGGATTTGGTCAGAAGGATGAACGTGATCGTTGGGGAGCTGGTCCTGATCGTGAAAGGCAGCGTGATGAAGACCGATCTGGAGGAACTGATAATTGGAGACGTCCTTCAAAACCTGACTTGCCACCATCTAGGCATATTGAGGAACAGGCTGCCTAA___AGGTTGCGGTGTTGTCTCTCCTACTGCACTTTGGCTTACGTGGGCTAGATTTTGTGCTGGCTTGCGTGCACAGATATCATGAGATCAATTTGTCATTTAGTTGGAATTTGGTTGTGTACTTAAATTTGTTGACTTCAAGTGACATAATGGAGATCCGTCAGTTTTTGGTTGCAGAGCATGTTGGAAGGCTCGTTAGACTTGCCTATAAAGGTTGTGTAGAAATAAAAATCTAGTTCCTGTTTTCATTTTCGAGGAATTTGAGCTAGTTTGGACTAGTAGTATTATTTGGACTTATTTTCATTTATTAAGGGAACATACCTCTGGTTTCTCGCATGCAAACTTGTTATGGACATTGAAAAGGATGATTCCTGGGGCACTGGTTTTCTAAAAAGCAGTGGGTAGGTATGATAATTTATACGATTTTGTTTTTATTTCTTCAAAAAAATGGAATACACTTCTTCGTTAC

Fln Alignment:

sp_v1.1_unigene18111___MLNDKNIFQNQVVSXXXXXXXXXXXXXXXXXXXXXAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDAEWRAKLDEIXXXXXXXXXXXXXXXXXXXXXXXXXXPRVSKPSEPSTNKFVPRALRKATESAGTEADTDRWRRGDRQTNVDGxxALPA-RQREADVPARDKYAPP-RKYEPPTRQTGVKYEPPVSGRRDSYEPARGRDAQPPVGRYEPRSKFGGFGQ-KDERDRWGAGPDRERQRDEDRSGGTDNWRRPSKPDLPPSRHIEEQAA
D5ADZ5_______________MLNDKNIFQNQVVSRREGEFERLKREREERLAELQAIRKQEREMRRKMEYYRRQEEARLIKLKEEEEARKREEEERKRKQDAEWKAKLDEMTEKQKQRERELEEKERLRKEALIKEEPRVSRPTEPVPNKFVPRAMRKAAESAGTEADNDRWRRGDRQTHVDGxxGLPIPRQREADVPARDKYAPPSRKYEPPTRTTQGKYEPPVSGRRDNYEAPRGRDAQPPIGRFEQRPKYGGFGNNKDERDRWGAAPDRERQRDEDRSGGADNWRRPSKPDLPPSRHLEEQAA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1117		96		3	0.982166
1362	6		93		0.999264
1363	13	86			1.0
1365		14		85	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain