SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18106

Length: 1088 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18106 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF761 domain containing protein	-	-	8.0e-38	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	2.08028e-33	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA37

Fln msg:

Fln protein: MEIPARKRSSASTTVPHIYRVSFLVVAVASASFVLKALFPSLQRSVALIVSWVRESFSGWLNPPYLFFLLNCIILAIFVNSGGLPKFDLTPNKSHDEPQEPDGHRHFLRVKEISHDLAPEDNEIIHNDCEQAEVTDSGFATPLFEVEKCMTSSEAAAWKPAHVGIANADDDQSNKMLASARFTRRKVSVHGSACKSLRVSQKHKEETFESAWKKITEGRHPPLTRHLRPSPNNLDESRIDHSSPSVRRGNEEESSALPCSGVRRSGGSLKRESSYVGVDELNKRVEAFIDKFNTEMRLQKEDSLVRYMEMINRGAS*

Protein Length: 318

Fln nts: ATGGGGATCGTCCATTTGCCAACTGCATCGGCTTTCTATTAATTTGCAGCTTTTCACGTATATATATAT_-_ATGGAGATACCGGCGAGGAAGAGATCATCCGCCTCCACTACAGTGCCCCATATTTACAGAGTTTCATTTTTAGTGGTGGCCGTGGCTTCTGCTTCGTTTGTATTGAAGGCGCTGTTTCCTTCGCTTCAGCGCTCTGTGGCGCTGATCGTTTCGTGGGTACGGGAGTCGTTCTCTGGCTGGCTGAATCCGCCATATTTGTTTTTCCTCTTGAACTGCATCATTCTCGCCATATTCGTCAATTCTGGTGGCCTGCCCAAATTCGATTTAACGCCCAATAAATCCCACGACGAACCCCAGGAGCCGGACGGCCATCGCCATTTCTTGCGAGTCAAGGAAATCAGCCACGACTTGGCCCCAGAAGACAATGAAATAATTCACAATGATTGTGAACAAGCTGAAGTGACCGACAGTGGATTCGCGACCCCTTTGTTCGAAGTGGAAAAATGCATGACTTCTTCGGAAGCAGCGGCATGGAAACCTGCTCATGTGGGTATTGCAAATGCCGATGATGATCAGTCGAATAAAATGTTGGCTTCTGCTCGTTTCACTCGTCGAAAGGTGAGCGTGCATGGAAGCGCCTGCAAATCTCTCCGGGTGAGCCAGAAACACAAAGAAGAAACATTTGAATCGGCGTGGAAAAAAATCACAGAGGGGCGTCATCCCCCTCTTACGAGGCATCTCCGTCCAAGCCCCAACAACCTGGATGAATCAAGAATCGATCATTCTTCCCCTTCTGTCAGGCGGGGCAATGAAGAAGAATCTTCAGCGCTCCCGTGTAGTGGAGTAAGGAGGTCCGGGGGAAGCTTGAAGAGGGAAAGTTCTTATGTTGGGGTGGATGAACTGAACAAACGGGTGGAGGCGTTCATCGACAAATTCAATACCGAGATGAGGCTGCAGAAGGAAGACTCTCTTGTCCGCTACATGGAAATGATCAACAGGGGCGCCTCATAA___CTATATCATTCCTCTCTTATCATTAATTTATTGCACGGCTCATCCATGTATGTCTATGATACACAGTT

Fln Alignment:

sp_v1.1_unigene18106___PSLQRSVALIVSWVRESFSGWLNPPYLFFLLNCIILAIFVNSGGLPKFDLTPNKSHDEPQEPDGHRHFLRVKEISHDL-APEDNEIIHN----------DCEQAEVT--DSGFATPLFEVEKCMTSSEAAAWKPAHVGIANADDDQSN---KMLASARFTRRKVSVHGSACKS-LRVSQKHKEETFESAWKKITEGRHPPLTRHLRPSP----NNLDESRIDHSSPS--------VRRGNEEESSALPCSGVRRSGGSLKRESSYVGVDELNKRVEAFIDKFNTEMRLQKEDSLVRYMEMINRG
D5AA37_______________PSVRHFILHTVPSLWLSFSSWLNPPYLYIILNCIILTIAATSS-------LHQKLKTEESESNSHDYKAPPPEISYRYQSPPPSELKYQYQIGFQKKPISYEQYSLVPEEPHFTKQIQEDDEDADFISRSNWSPEASCITTAATTTTNMEEKPLVSSRFTHKRYAKASPDAKSPLRIARPKKGETLEYTWKTLTERRHPPLTRHLRKSETWDSSSPSRANADHSSPARNLRKSETMKHRGREDSPASPC---------LKREPS-LSQDELNRRVEAFISKFNMEMRLQRQNSFTSYMEMINRG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
197	83		16		0.994512
219			16	83	0.994512
241		83	16		0.994512
269		83		16	0.994512
292		16	83		0.994512
303	16		83		0.994512
315	80			20	0.995493
319	80		20		0.995493
331	20	80			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1018	1030	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain