SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18078

Length: 482 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene18078
GCGGCATCAATTCCAGGGGGAATTTCAAGTGCTTCAGGTGGTGCTCCGAATCACAGTAGGCATGCTATCCCTAGTGGAGGTGTCTGGGCACCTGGCAAAGGTGGTGTACCTACCGCTGGCAGAGGTGATTGGTCCTCTAGTGGCGGCAGAGGTTTTGTGCAAAGAAGTTTCCTCTCTGGTGCTGGCATGCCTCCTTGGAGCAATGTTCCTGGAGGGCGTGGTTTTCAAATTGGCTTTGAATTCTCTCTTCCTCCTAACAAGACGGTATTTGAAATTGACATTGATAACTTTGAGGAGAAGCCATGGAAGCTTCCTGGAATGGATATAACAGATTTCTTTAACTTTAAACTTGACGAAGACAGTTGGAAGGAGTATTGCAGAAAACTGGAACAACATAAGTTGGAGGCAACCATGCAAAGCAAAATTCGTGTCTATGAAAGTGGGCGTTCTGAGCAGGAGTATGATCCGGACCTACCAATTGA

Ace file of the UniGene sp_v1.1_unigene18078

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBX9_RICCO	-	-	5.0e-39	67%
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	67%
Blast2go	protein	-	-	8.92624e-39	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	8.92624e-39	77%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	8.92624e-39	77%
Blast2go	identical protein binding	GO:0042802	Molecular Function	8.92624e-39	77%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	8.92624e-39	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	8.92624e-39	77%
Blast2go	ATPase activity	GO:0016887	Molecular Function	8.92624e-39	77%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	8.92624e-39	77%
Blast2go	transporter activity	GO:0005215	Molecular Function	8.92624e-39	77%
Blast2go	outer membrane-bounded periplasmic space	GO:0030288	Cellular Component	8.92624e-39	77%
Blast2go	nucleus	GO:0005634	Cellular Component	8.92624e-39	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pre-mRNA polyadenylation factor Fip1	IPR007854	-	8.92624e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SBX9

Fln msg: Distance to subject end: 925 aas, your sequence is shorter than subject: 160 - 1365

Fln protein: AASIPGGISSASGGAPNHSRHAIPSGGVWAPGKGGVPTAGRGDWSSSGGRGFVQRSFLSGAGMPPWSNVPGGRGFQIGFEFSLPPNKTVFEIDIDNFEEKPWKLPGMDITDFFNFKLDEDSWKEYCRKLEQHKLEATMQSKIRVYESGRSEQEYDPDLPI

Protein Length: 161

Fln nts: GCGGCATCAATTCCAGGGGGAATTTCAAGTGCTTCAGGTGGTGCTCCGAATCACAGTAGGCATGCTATCCCTAGTGGAGGTGTCTGGGCACCTGGCAAAGGTGGTGTACCTACCGCTGGCAGAGGTGATTGGTCCTCTAGTGGCGGCAGAGGTTTTGTGCAAAGAAGTTTCCTCTCTGGTGCTGGCATGCCTCCTTGGAGCAATGTTCCTGGAGGGCGTGGTTTTCAAATTGGCTTTGAATTCTCTCTTCCTCCTAACAAGACGGTATTTGAAATTGACATTGATAACTTTGAGGAGAAGCCATGGAAGCTTCCTGGAATGGATATAACAGATTTCTTTAACTTTAAACTTGACGAAGACAGTTGGAAGGAGTATTGCAGAAAACTGGAACAACATAAGTTGGAGGCAACCATGCAAAGCAAAATTCGTGTCTATGAAAGTGGGCGTTCTGAGCAGGAGTATGATCCGGACCTACCAATTGA

Fln Alignment:

sp_v1.1_unigene18078___VQRSFLSGAGMPPWSNVPGGRGFQIGFEFSLPPNKTVFEIDIDNFEEKPWKLPGMDITDFFNFKLDEDSWKEYCRKLEQHKLEATMQSKIRVYESGRSEQEYDPDLP
B9SBX9_______________MQKGYHPGFGMP-WGNNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWKYPGVDMSDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRAEQEYDPDLP

SNPs (tot: 3)

Position	A %	G %	T %	Probability
294		83	16	0.994512
297		83	16	0.994512
299	83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain