SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18065

Length: 931 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18065

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytohesin 1, 2, 3, putative n=1 Tax=Ricinus communis RepID=B9RDE3_RICCO	-	-	78%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	25%
Blast2go	guanine nucleotide exchange family protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of ARF protein signal transduction	GO:0032012	Biological Process	84%
Blast2go	megagametogenesis	GO:0009561	Biological Process	84%
Blast2go	binding	GO:0005488	Molecular Function	84%
Blast2go	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SEC7-like	IPR000904	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 851 aas, your sequence is shorter than subject: 309 - 1451

Fln protein: S*PWLSLILVFRALCKLSMKSIPQEATSDPLLMRGKSVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASPYMNIFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLDKLCIDSQILVDIFINYDCDVESSNIFERMVNGLLKTAQGVPPGSATTLLPPQDAAMKLDALKCLVGLLRSMGDWMNRQLRIPDSQNVETEDVSVDYVNGASLANEGGEESVDGREHHPEAGSETSEAATFEQRRAYKLELQEGISLFNRKPRKGIEFLVNAKKVGDSPEEIA

Protein Length: 310

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGTTTTCAGGGCATTGTGTAAGCTCTCAATGAAGAGTATACCTCAAGAAGCTACTTCGGATCCGCTTCTTATGCGGGGAAAGTCAGTGGCATTGGAGCTATTGAAGATTCTTCTAGAAAATGCTGGAGCTGTTTTCCGCACGAGTGAGAGGTTTCTGGGGGCCATCAAGCAGTACCTTTGCCTATCACTTTTGAAGAACAGCGCATCACCTTATATGAACATTTTTCAACTTTCTTGCTCCATTTTCATGAGCTTGGTTTCCAGATTCAGGGCAGGATTGAAAGCTGAGATAGGAGTGTTTTTTCCAATGATTGTTCTTCGAGTTTTGGAAAATGTTTCCCAGCCAAATTTTCAGCAGAAGATGATTGTTCTTCGCTTCTTGGACAAACTTTGTATAGATTCCCAAATTTTGGTTGACATATTTATCAATTATGATTGTGACGTCGAGTCATCTAACATATTTGAGCGGATGGTCAATGGGCTTCTAAAAACTGCTCAAGGTGTCCCTCCAGGTTCTGCCACTACATTGTTACCACCTCAGGATGCCGCCATGAAACTTGACGCCCTTAAGTGTTTGGTAGGGTTGTTGAGATCAATGGGAGATTGGATGAATCGGCAACTAAGGATTCCAGATTCACAGAATGTTGAAACTGAAGATGTTAGTGTAGATTATGTAAATGGTGCATCTTTGGCAAATGAAGGCGGGGAGGAGTCCGTGGATGGCAGGGAACACCATCCTGAAGCAGGTAGTGAAACGTCAGAGGCTGCTACATTTGAACAACGCCGTGCTTATAAACTAGAACTTCAGGAAGGTATATCCCTTTTCAACCGGAAGCCACGCAAGGGCATTGAATTCCTTGTCAATGCAAAGAAGGTTGGAGACTCCCCTGAGGAGATAGCTGC

Fln Alignment:

sp_v1.1_unigene18065___ALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASPYMNIFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLDKLCIDSQILVDIFINYDCDVESSNIFERMVNGLLKTAQGVPPGSATTLLPPQDAAMKLDALKCLVGLLRSMGDWMNRQLRIPDSQNVETEDVSVDYVNGASLANEGGEESVDGREHHPEAGSETSEAATFEQRRAY-KLELQEGISLFNRKPRKGIEFLVNAKKVGD--SPEEIA
Q42510_______________ALNLINSAIELGGSSIRHHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYQHLRTELKLQLEAFFSCVILRLAQGKYGPSYQQQEVAMEALVNFCRQKSFMVEMYANLDCDITCSNVFEELSNLLSK---------STFPVNCPLSAMHILALDGLIAVIQGMAERISNGLTGLDLGPVHLDEYTPFWMVKC------------------DNYSDPNHWVSFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
681	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain