SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18053

Length: 1311 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18053 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SYX7_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	gdsl-motif lipase hydrolase family protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRW6

Fln msg:

Fln protein: MSAFRSSLWAFAFQTFLLGVYAEAQNVGAVLFFGDSYGDPGNNNHIPTLIKSNFPPYGRNFVGGIPTGRFSDGKILPDYLVAGLGIKELLPAYLDPNLQEQDLITGVSFSSSGTGLDNLTAATLSVIPMWKEIEYFKEYRTRVATLVGGIEKASMLLNTAVAFISIGTNDFIANYFLEPIRPSHFSVSQYVDFLLRTLSGYIEDLYSLDVRRIAVINLPPLGCLPFEKSLHIKVGGECAEKVNEAAAEFNEKLISTIDALKAKLPGLKIVSLKYFDIVLDAIKDPAKYGFEVTGKACCGTGTIEFGYLCNEATPFTCSDASKYVFFDSIHLTQKSYAIISQVFLKEGVSELL*

Protein Length: 354

Fln nts: ATGGGGATCACCAGTGCCTCTGTGCCTGACAGAGTTGTGTGACTGGGTTTAATTATTTGTTTGAACGCCATCGCC_-_ATGTCTGCATTTCGATCGTCCCTGTGGGCATTTGCGTTTCAGACATTCTTGCTCGGGGTTTACGCTGAGGCACAGAATGTTGGAGCAGTTTTGTTTTTCGGAGACTCTTATGGAGATCCCGGAAACAACAACCACATTCCCACATTAATCAAGAGTAATTTCCCTCCCTATGGAAGAAATTTCGTGGGAGGCATCCCCACAGGGAGATTCTCCGATGGAAAAATTCTTCCAGACTATTTGGTTGCAGGGCTTGGCATCAAAGAGCTGCTGCCAGCATATCTTGATCCGAACCTTCAAGAACAAGACTTGATCACAGGCGTCAGTTTCTCCTCATCGGGGACCGGATTAGACAATCTCACCGCTGCCACTTTATCGGTGATTCCAATGTGGAAAGAAATCGAATATTTCAAGGAATATCGAACTCGGGTGGCCACGCTGGTTGGAGGTATAGAGAAGGCTTCCATGCTGTTGAATACCGCAGTGGCGTTTATCAGCATTGGCACTAACGACTTCATTGCAAATTATTTTCTGGAACCAATTCGCCCATCGCACTTTTCAGTTTCCCAATACGTAGATTTTCTATTGCGCACATTATCTGGATATATTGAGGATCTGTACAGTTTGGATGTGCGTAGGATTGCGGTAATAAACCTACCTCCTTTAGGCTGTCTACCCTTTGAAAAATCTCTGCATATTAAAGTAGGAGGAGAGTGCGCAGAGAAAGTGAACGAGGCCGCCGCTGAATTTAATGAAAAACTCATATCGACCATTGATGCACTGAAAGCTAAGCTTCCTGGGCTCAAAATTGTTTCTCTCAAATATTTCGACATTGTCTTAGACGCCATAAAAGATCCAGCTAAATATGGGTTTGAAGTGACGGGAAAAGCTTGCTGTGGCACTGGTACCATCGAATTCGGGTATCTGTGCAACGAGGCGACACCGTTTACATGTAGTGATGCTTCAAAATATGTATTCTTTGATTCAATTCATCTTACTCAGAAGTCTTACGCGATCATCTCTCAAGTATTTCTGAAAGAAGGCGTTTCAGAGCTCTTGTAA___TTCACTCATATTGTCCGTGTTGTTGGGAAGGAAAAATTTTACATTCAATAAGAAGGCTGCTTTCGTAATTTTTGTAATGCATTAAATTGCAAGGCCTACATTGATACTATTGGCCTCTAAAGACCAATAAATCCAATCATCGTTTATGTGTGAAGTAGAATTGGCCATGGACACGTT

Fln Alignment:

sp_v1.1_unigene18053___LIICLNAIAMSAFRSSLWAFAFQTFLLGV--------YAEAQNVG--AVLFFGDSYGDPGNNNHIPTLIKSNFPPYGRNFVGGIPTGRFSDGKILPDYLVAGLGIKELLPAYLDPNLQEQDLITGVSFSSSGTGLDNLTAATLSVIPMWKEIEYFKEYRTRVATLVGGIEKASMLLNTAVAFISIGTNDFIANYFLEPIRPSHFSVSQYVDFLLRTLSGYIEDLYSLDVRRIAVINLPPLGCLPFEKSLHIKVGGECAEKVNEAAAEFNEKLISTIDALKAKLPGLKIVSLKYFDIVLDAIKDPAKYGFEVTGKACCGTGTIEFGYLCNEATPFTCSDASKYVFFDSIHLTQKSYAIISQVFLKEGVSELL
C0PRW6_______________MLLCLNW-AMERSGSLISASTLGTILLMISFFQTWKFIAEAKNVPVPAVFFFGDSYGDTGNNDYISTSIKGNFPPYGRDFIHHIPTGRLSNGKLIPDYIVEGLGVKDLLPPYLDPKLQDSDLITGVSFDSAGTGLDNITSTIQEVIPFWKEVEYFKEYKTRLIGLVGD-ERANMILSEAIYFIVIGTNDFAVNYYNYPFRSAHYTVSQYTDFLLQIYASHIKELYSLNARKIGLINLPPLGCLPIKRS-----KGECVEEINQAASGFNEGMNAMIEHLKPVLPGLKIVSLDYHAVILDFIQNPGKFGFQVTANGCCFATDTETGF-CKKFTPFTCADADKYVFFDSVHLSQKAYQVIANVFLRREILRLL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
959		88		11	0.923564
980		88	11		0.923564
1047	16		83		0.994512
1190			90	10	0.90298
1191		90		10	0.90298
1201		20		80	0.999996
1221		30	70		1.0
1254		71	28		1.0
1260	85	14			0.993533
1262	14			85	0.993533
1267	66			33	1.0
1271		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain