SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18032

Length: 291 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene18032
CGTCGTGACCTTGGCTGTCACTCAGTTTTTGAAGAGATGCCCGAGCGAAACATAGTCTCATGGACTGGAATGATTACTGGGTATGCACAGAATGGGCAGGGAGAGGAGGCCCTCAACTTGTTTGGTGAAATGCGAAAGCAACAACTTCATGGAATTCGATTTGAAGCTGTGGACAACGAGTTCACTTTAGCCAGTGTCATTGGTGCCTGTGGCACACTAGGAGCCATGGAAGAGGGAAAATCCCTCCATGCCAACATTATTAAATGTGGATTTGCTGCTTGTGTGGGTATT

Ace file of the UniGene sp_v1.1_unigene18032

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	binding [Arabidopsis thaliana] sp\|Q683I9.1\|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890 dbj\|BAD42891.1\| putative protein [Arabidopsis thaliana]	-	-	3.0e-13	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	at3g62890-like protein	-	-	5.38077e-15	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	5.38077e-15	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	5.38077e-15	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 335 aas, your sequence is shorter than subject: 97 - 514

Fln protein: RRDLGCHSVFEEMPERNIVSWTGMITGYAQNGQGEEALNLFGEMRKQQLHGIRFEAVDNEFTLASVIGACGTLGAMEEGKSLHANIIKCGFAACVGI

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGAAGAGATGCCCGAGCGAAACATAGTCTCATGGACTGGAATGATTACTGGGTATGCACAGAATGGGCAGGGAGAGGAGGCCCTCAACTTGTTTGGTGAAATGCGAAAGCAACAACTTCATGGAATTCGATTTGAAGCTGTGGACAACGAGTTCACTTTAGCCAGTGTCATTGGTGCCTGTGGCACACTAGGAGCCATGGAAGAGGGAAAATCCCTCCATGCCAACATTATTAAATGTGGATTTGCTGCTTGTGTGGGTATT

Fln Alignment:

sp_v1.1_unigene18032___VFEEMPERNIVSWTGMITGYAQNGQGEEALNLFGEMRKQQLHGIRFEAVDNEFTLASVIGACGTLGAMEEGKSLHANIIKCGFA
D5AD86_______________LFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDR-------FIMGSVLSACADLAALELGRQFHAYVVQSGFA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
204		20		80	0.995493
237	75		25		0.996473
240	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain