SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18025

Length: 1439 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18025

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclic nucleotide-gated ion channel, putative n=1 Tax=Ricinus communis RepID=B9RIK4_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	cyclic nucleotide and calmodulin-regulated ion channel	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transport	GO:0006816	Biological Process	84%
Blast2go	transmembrane transport	GO:0055085	Biological Process	84%
Blast2go	potassium ion transport	GO:0006813	Biological Process	84%
Blast2go	cyclic nucleotide binding	GO:0030551	Molecular Function	84%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	84%
Blast2go	intracellular cyclic nucleotide activated cation channel activity	GO:0005221	Molecular Function	84%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclic nucleotide-binding domain	IPR000595	-	84%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	84%
Blast2go	Cyclic nucleotide-binding-like	IPR018490	-	84%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 355 - 659

Fln protein: IGQNLSSLGQNLQTSTYVWEIGFAMFIAIIGLVLFALLIGNMQTYLQSSTTRLEEMRIKRRDTEQWMHHRLLPENLQKCVRRYDQYKWLETRGVDEENLIQNLPKDLRRDIKRHLCLDLVRRVPLFESMDDQLLDAMCERLKPALYTEQTYIVREGDPVDMMLFIIRGRLESATTNGGRTGFFNSGVLQQGGFCGEELLTWALDPKSGANLPSSTRTVKSLIEVEAFALRAEDLKFVATQFRRLHSRQVQHTFRFYSQQWQTWAACFIQAAWRRYYKKKNEYLLHKEENKFRVALSGSNGNASPSLGATIYASRFAANALRAHRQRNMERPARTTPLIKLQKPAEPDFTAEDSE*

Protein Length: 356

Fln nts: ATTGGGCAAAACCTAAGCTCACTTGGGCAGAATCTACAAACAAGCACTTATGTTTGGGAGATCGGTTTTGCTATGTTCATTGCCATCATTGGCTTGGTTCTATTTGCCCTTCTTATTGGAAACATGCAGACCTATTTGCAGTCTTCAACCACAAGGCTAGAAGAAATGCGAATAAAGCGGCGTGATACAGAGCAATGGATGCATCATCGTTTACTTCCAGAAAACCTGCAGAAATGTGTTCGTCGGTATGACCAGTATAAATGGCTGGAAACAAGAGGAGTGGATGAAGAGAACTTGATTCAGAACCTTCCAAAGGATCTGAGACGTGATATAAAACGTCATCTCTGCTTAGATTTGGTCAGGAGGGTACCTTTGTTTGAGAGTATGGATGATCAGTTGTTGGATGCAATGTGTGAACGTCTCAAGCCAGCACTTTATACCGAGCAGACATATATTGTCAGAGAGGGGGATCCAGTTGATATGATGCTTTTCATTATTCGTGGTCGTTTGGAAAGTGCAACAACAAATGGAGGAAGAACTGGATTTTTTAATAGTGGTGTTCTTCAACAAGGAGGTTTCTGTGGTGAAGAACTGCTGACATGGGCTTTAGATCCCAAGTCTGGTGCAAATCTTCCATCTTCTACCAGAACTGTAAAATCTCTGATTGAGGTAGAAGCATTTGCTTTAAGAGCAGAGGATTTGAAGTTTGTTGCAACTCAATTCAGACGTCTGCATAGCCGACAGGTTCAGCATACTTTTCGTTTCTACTCCCAACAGTGGCAAACATGGGCTGCTTGTTTCATCCAAGCAGCATGGCGTCGTTACTATAAAAAGAAAAATGAATATCTTCTCCATAAAGAGGAAAACAAATTTCGGGTAGCCCTGTCAGGGAGCAATGGCAATGCTTCTCCCAGTCTTGGAGCAACTATATATGCATCTCGGTTTGCAGCTAATGCCCTTCGTGCTCACAGACAACGAAATATGGAACGTCCAGCAAGGACCACCCCACTGATTAAGCTCCAAAAGCCAGCAGAACCAGATTTCACTGCTGAAGATTCTGAATGA___TAATTAAGAAAATACCACAACTGAATCTTTCTTACATCTGCTAGTTAAAACATAAACTGCCTCACTATCATCAAAACAAACTTAGGACAGATTAGGGATCTTCCCTCGTACTTACAAAAGTTCAGGTTTGCATGAAATGTGCAAGGTTGAAGAAATAGTTTCTTCTTCAATGTTTCAGGTTATTAATTTGTACAGTCCCATGCATTATATCTGGTTGATGATCAACCTATTGCAATCAATCCCATGTACAGAAGTTAGTTTGTGATTCTATTTATAAATTATAATGTGTGCTTGTTATGATCAAGTTACTGATAAACTATATGTGGGTGTCGCTGAAGTTCCTCTATAATTTTTATGTCACAAAGCTGAAGAAC

Fln Alignment:

sp_v1.1_unigene18025___LSSLGQNLQTSTYVWEIGFAMFIAIIGLVLFALLIGNMQTYLQSSTTRLEEMRIKRRDTEQWMHHRLLPENLQKCVRRYDQYKWLETRGVDEENLIQNLPKDLRRDIKRHLCLDLVRRVPLFESMDDQ-LLDAMCERLKPALYTEQTYIVREGDPVDMMLFIIRGRLESATTNGGRTGFFNSGVLQQGGFCGE
B8LPV4_______________LSTVGYGDIHAVNTREMIFIIFYVFFNLGLTAYLIGNMTNLVVQGTSRTMQFRNKIRAASNFGNRNDLPPKLKEQILSYMCLKF-RAEELQQQKVMEELPKSIRTSISRCLFIETVETVYLFQGVSTEFILDLVTEMHAEYFPPKEDILLQNETPSDIYL-LVSGEVEMLTCENGNEQVVES--LRAGGLFGE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
326	20		80		0.995493
559		25		75	0.996473
676	85		14		0.993533
678		85	14		0.993533
1369	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain