SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18017

Length: 1664 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18017

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZZ0

Fln msg:

Fln protein: MARVYCVAWGRVFIPYQQTHFDTRRAASPDTKILPCRGLNHGPMAERHPWNRRNLQVVAATEGSAKSKPSDPKIPSWAKPDSDELPPWARKEGKGQTADPAEQAFKIPFYVYLLSSAIVAIAAVGSMFEYVNQKPVFGLLNSDSVFYAPVLGFFALSGIPTSVFLWFKSIETANKAAEEQDRQDGYK*

Protein Length: 189

Fln nts: CGTCGTGACCTTGGGTGTCACCTATTGTTATCACCCGAGGGAATGCTGTCAATGGAAGGCCAAGAAACCTTTGCAGGGCTTCTTAAAAAAAATCCAAAACTTTACATTGCTGTAGCTGAGGCAGAAATTCCTTAGATATTTCAAGGCGTAAGCAGGGAAGGA_-_ATGGCCAGAGTATATTGTGTGGCATGGGGAAGAGTATTCATCCCATATCAGCAAACCCATTTCGACACCAGAAGGGCTGCAAGTCCCGATACAAAGATATTGCCATGCAGGGGATTGAACCACGGACCTATGGCTGAACGCCACCCTTGGAATCGGCGAAACCTGCAGGTGGTTGCAGCTACAGAGGGCTCTGCCAAATCCAAGCCAAGTGACCCAAAAATCCCATCCTGGGCAAAGCCTGATTCTGATGAGCTTCCGCCGTGGGCTAGGAAAGAAGGGAAAGGGCAGACCGCAGATCCAGCTGAACAAGCCTTCAAGATTCCATTTTATGTGTACTTACTATCTTCTGCAATCGTCGCCATAGCTGCGGTTGGTTCAATGTTCGAATATGTCAACCAAAAACCTGTTTTTGGACTCCTGAATTCTGATAGTGTTTTTTATGCTCCTGTGCTTGGATTCTTTGCCCTCAGTGGCATTCCTACCTCTGTCTTCCTTTGGTTCAAGTCTATTGAAACTGCTAACAAAGCAGCAGAAGAACAGGACAGACAAGATGGGTACAAATGA___CAATTCCCTCTAGTATTTTCATCTTATAGGCATCAAATATCTACAGACAATCTGTAAACTAAACCTAAAGAAGCTACTACACTATGCTTCAATTTCATTGTTTTGTATATTAACCAAAGTCTTCACCATGTTCGACACAAATCAAGAATTGGTAATTCTGGTAATTTTTCTCTATTCAATTTCTTGCATGTCAACAGTAGCAGCAGACTCATGTCTATGAGATTTGAGCTTAGCATGCTTGATGATGGTACAACCCCCTGGTCATCTAGAGACAAGGACATACCAATTCCATCAGGAGAACAAATGGCTACAAAAGATTCTCAAACTCATGTCCATGGTCTCTTGCCAAAAAGGCCTGAAATTACTCAATGGCCTACTGGTTCAGAGGGAGACCAAGCACAGCAGAACTTATGCATAAGCAGTTGAACCACTAGAGGTTCTGGTCCCAATCCTCCTTTCATCACGTCAATAATATTTGGTGGGGAGTTGAAAGCCCAACTTTGGTTAACCTGCTTTACCTGAAGAAGCTGCATTAATCGGACCTAAGTTAGCTTCTCTGGTCTCTCACCATTGTCGGCACCTCATCTAGATTTGACTTAGAGATGAACTCAGTGTTACCTTACTTCCGAGTTATTTTATTGTCCAAAGGAAATTGCTGAATGTTTTGCTGAAGTGCCTCAATAGCCCATTGAGTCTCTCAGCTGCACCAATTCCACTATTGATTTCTCAGATCGATGACCTTGGCGTGTGATCTTTAATATGAAATATGAACATAGTAATAGGGCTTCCTGTTAATTAAGAAACTTGCTGAGGTTACTTCAGCAATTTTCACCAATACTCAGCATGACTTGGTCAACCTTGGTAAAAACAATTCAAACTCACATGTCAGATTCGGTCAAGCTTAGACACAATCAATTCGAGTTTAGTCATATTTTTTC

Fln Alignment:

sp_v1.1_unigene18017___MARVYCVAWGRVFIPYQQTHFDTRRAASPDTKILPCRGLNHGPMAERHPWNRRNLQVVAATEGSAKSKPSDPKIPSWAKPDSDELPPWARKEGKGQTADPAEQAFKIPFYVYXXXXXXXXXXXXGSMFEYVNQKPVFGLLNSDSVFYAPVLGFFALSGIPTSVFLWFKSIETANKAAEEQDRQDGYK
A9NZZ0_______________MARVYCVVLERLFIPHQQTHISTRRGASADTKIWPCRGLNHGPMAQRHHWNRRNLHVVAATEGSAKSEPSDPKIPSWAKPDSDELPPWARKEGKGQTADPAEPTFQIPFYVYLLSSAIIAIAAVGSVFEYVNQKPVFGLLNSDSVFYAPLLGFFTFTGIPTSVFLWLKSIEAANKAAEEQDRRDGYK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
45			16	83	0.994512
47		83		16	0.994512
75	16	83			0.994512
905	66		33		0.997452
1544	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain