SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18016

Length: 470 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene18016
ATGTGGATATGGCAGTGTAGTGAAAGAGAAGCCCTTCCAATCAAAAGTAGCTGCAGGAAGCCCTGCCCTATTCGAAGGAGGGAAAGGATGCGGAGCTTGTTATCAGGTAAAGTGCACCGAGAACAGTGTGTGCTCCCAGACTGCAGTGACTGTGGTGATTACAGATGAATGTCCCGGTAGAATCTGCTCAGGTAGCGGCAAAATACACTTTGATCTCAGCGGTACTTCCTTCACTGACATGGCATCTCCCGGTACATCTTCAGATCTTCTCAATGCCGGAATCGTCTCTATTTTATTCCGACGTGTACCTTGCGAATATCCGGGGAACAAGATTGCATTCCATGTCAACGAAGGCGCCAGTGACCATTGGTTCGCCATCCTTGTTGAATACGAAGACGGAGATGGCGATCTTGGAGCAGTCGATCTAAAGCAGGCAAACTCTGATACATGGCAAGGAATGCAACAGATAT

Ace file of the UniGene sp_v1.1_unigene18016

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-expansin 3 precursor, putative	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	beta-expansin 3	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Major pollen allergen Lol pI	IPR005795	-	73%
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	73%
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	73%
Blast2go	Expansin/Lol pI	IPR007118	-	73%
Blast2go	Barwin-related endoglucanase	IPR009009	-	73%
Blast2go	Barwin-like endoglucanase	IPR014733	-	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9L6

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 156 - 281

Fln protein: CGYGSVVKEKPFQSKVAAGSPALFEGGKGCGACYQVKCTENSVCSQTAVTVVITDECPGRICSGSGKIHFDLSGTSFTDMASPGTSSDLLNAGIVSILFRRVPCEYPGNKIAFHVNEGASDHWFAILVEYEDGDGDLGAVDLKQANSDTWQGMQQI

Protein Length: 157

Fln nts: ATGTGGATATGGCAGTGTAGTGAAAGAGAAGCCCTTCCAATCAAAAGTAGCTGCAGGAAGCCCTGCCCTATTCGAAGGAGGGAAAGGATGCGGAGCTTGTTATCAGGTAAAGTGCACCGAGAACAGTGTGTGCTCCCAGACTGCAGTGACTGTGGTGATTACAGATGAATGTCCCGGTAGAATCTGCTCAGGTAGCGGCAAAATACACTTTGATCTCAGCGGTACTTCCTTCACTGACATGGCATCTCCCGGTACATCTTCAGATCTTCTCAATGCCGGAATCGTCTCTATTTTATTCCGACGTGTACCTTGCGAATATCCGGGGAACAAGATTGCATTCCATGTCAACGAAGGCGCCAGTGACCATTGGTTCGCCATCCTTGTTGAATACGAAGACGGAGATGGCGATCTTGGAGCAGTCGATCTAAAGCAGGCAAACTCTGATACATGGCAAGGAATGCAACAGATAT

Fln Alignment:

sp_v1.1_unigene18016___CGYGSVVKEKPFQSKVAAGSPALFEGGKGCGACYQVKCTENSVCSQTAVTVVITDECPGRICSGSGKIHFDLSGTSFTDMASPGTSSDLLNAGIVSILFRRVPCEYPGNKIAFHVNEGASDHWFAILVEYEDGDGDLGAVDLKQANSDTWQGMQQI
D5A9L6_______________CGYGTLVDQKPLRATVGAVSPVLFHGGEGCGACYKVKCMEKGLCSQKPVTVVITDVCGGGYSAFGGGTHFDLSGAAFGRMATHGKTPALLNSGELPVLYRRTFCKYPGKNISFHVTEGSTVYWFSILIEYEDGDGDVGAVHLKQVDSNAWMKMRHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain