SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18008

Length: 1330 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene18008 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MEE59 (maternal effect embryo arrest 59) [Arabidopsis thaliana] gb\|AAK44007.1\|AF370192_1 unknown protein [Arabidopsis thaliana] emb\|CAB16754.1\| putative protein [Arabidopsis thaliana] emb\|CAB80396.1\| putative protein [Arabidopsis thaliana] gb\|AAK62646.1\|	-	-	4.0e-14	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	at4g37300 c7a10_60	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL35

Fln msg:

Fln protein: MGKGGLTIQKPSRSDEILEAQQQLQIAEQIKSHFESLAPKRHRKPLRSESSDDYLDVQDDLCDDIPPELEKYQELKSRYGSLFVSKNGERLPEEFVETDYYNDLNAIDKVHCPPGEAFIKLDCNGGSYFRLAYQEDTGLVERIPVRSNPATNDWFPAPVDDHSTVRRVSVY*

Protein Length: 173

Fln nts: CGTCGTGACATTGGATGTGATTCATCTTTACCTTCTTTGAAGCAATCTATGGGCCGATCCCTGTCGCGCGCCTATAATATATTTCCATTAACGTCGTGCCTTGGCTGTCAATCATATTTCTTCAGAGTCTCAACTGTTGCCATATTCCAGAGCTTTAACCTTATCTGATTACAGAGTATAGCGCCGCATTAAGTGGATATTTTATCTTAAGGGCATTTGATTTTGATTTTGATC_-_ATGGGAAAAGGAGGGCTGACAATACAGAAGCCGAGCAGGAGCGATGAAATTTTGGAGGCGCAGCAGCAATTGCAGATAGCAGAGCAGATTAAATCCCATTTCGAATCTCTGGCTCCAAAGCGCCACAGGAAGCCCCTTCGCAGCGAGAGCTCTGATGATTATCTTGATGTTCAAGATGATCTATGTGATGACATCCCTCCAGAGCTCGAGAAATACCAGGAGCTCAAATCTCGCTATGGGTCGCTATTTGTGAGCAAAAATGGAGAGAGGTTGCCAGAGGAGTTTGTGGAAACCGACTATTACAATGACCTGAACGCCATCGACAAGGTTCATTGCCCGCCTGGAGAAGCGTTTATAAAGCTGGACTGCAATGGTGGATCGTATTTCCGTTTGGCTTATCAGGAGGATACTGGATTAGTGGAACGGATCCCCGTTCGTAGCAACCCGGCTACCAACGACTGGTTTCCTGCTCCTGTAGATGATCATTCAACGGTGAGGAGGGTTTCAGTTTATTAA___TGTTTGATTTTACTTAGTGAAGTGAGGTGCTCTGTACCTTTATAGGGGAGATCTGGTGTTCTGGTGCAGCAAATTAGGGTTGCACTATCATTTTTTAAAGATCTTCTTAATGATTAATAGATCCCTGGTCTGAGATGAATTTGTGATAGATCCCTGTTCTGAGACAGATTTATGAGATTAATAGATCCCTGTTCTGAGATTTATGAGATTAGTAGATCCCTGGTCTGAGAATTTATGAAATCAATAGCTCTCTGGTTTGAGACAAATTGATTTCATTAATGGATCCGTGGTCTGAGATTTATTAATAAAAATCTCATTGGTTGTGATTATTGATGGTGTGGAATGGTTCTTGATGCGGCCCAGGTTATGCCTGTTTCGTCGAAGCCTGTCCGAAGCGGTTAAAGTTTGGGTGCGGAGTCATTCATTAATTGACTGTGTAATTCGATCCAAAGCTTATGAAGGACATGCGATGGTTTCTGTTGCAAGCCAAGCAATGCGCTGCGATTGTACATATTTCAGTGAATTTGCCAGATATGTGGCTTGGATTTAATAAAAAGTTTTCTGAATTTTGCTGGAAAAA

Fln Alignment:

sp_v1.1_unigene18008___QKPSRSDXXXXXXXXXXXXXXIKSHFESLAPKRHRKPLRSESSXXXXXXXXXXXXDIPPELEKYQELKSRYGSLFVSKNGERLPEEFVETDYYNDLNAIDKVHCPPGEAFIKLDCNGGSYFRLAYQEDTGLVERIPVRSNPATNDWFPAPVDDHSTVRRVSV
A9NL35_______________QKPSRSEEILEAQQQLQIAEQIKSHFESLAPKRHRKPLRSESSDDYDNVEDDPCDGIPPELKKYQELESRSESLFVSENGERLPEEFVETDYYKDLNAIDKVHHPPGEAFIKLDCNGGSYFRLAFQEETGLMERIPVRSNPATNDWLPAPVDDQEMVMAASL

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
707		88		11	0.923564
725		11		88	0.923564
812	88		11		0.923564
1138			2	97	0.975753
1186		2		97	0.977151
1205	4	95			0.999987
1213	83		3		1.0
1214		1		81	1.0
1216	3	3		88	0.998869
1220		10	42	47	1.0
1222	5	10	84		0.999846
1223	42	15		42	1.0
1224		61		38	1.0
1225	50	11	38		1.0
1230	83		5	11	0.999887
1232		43	50	6	1.0
1237	43		56		1.0
1239	43	56			1.0
1250	85			14	0.993533
1251			14	85	0.993533
1254	57	28	14		1.0
1255		28		71	1.0
1256		28	14	57	1.0
1258		14		85	0.993533
1262		20	80		0.995493
1264	20		80		0.995493
1265	20	80			0.995493
1269	80			20	0.995493
1272		20	80		0.995493
1285	75			25	0.996473
1288			25	75	0.996473
1291	25	75			0.996473
1296	75		25		0.996473
1297	75	25			0.996473
1298		25	75		0.996473
1304	75	25			0.996473
1305	75	25			0.996473
1306	50	50			1.0
1307		25	75		0.996473
1308	50			25	0.995533
1309		25		75	0.996473
1311	33		33	33	0.997753
1312	66		33		0.997452
1314		66	33		0.997452
1315	33	33		33	0.997753
1318			33	66	0.997452
1319		66	33		0.997452
1321	33	33	33		0.997753
1322	66			33	0.997452
1323			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1098	1115	ATCAAA ATCAAA ATCAAA	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain