SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18004

Length: 1622 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18004

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily	-	-	1.0e-09	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	auxin-induced protein	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	79%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT4

Fln msg:

Fln protein: MEKLIEKSKPYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIKNIRSQAKIVGTTVCVGGAMLMTLYKGPIVPMLWSPHHQSPETSSTTASAIDNKDWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGLCIRVKGPVFATAFSPLMMIIVAVMGSIILSENIFFGSVVGGVLIVIGLYAVLWGKVKDSKISAAKNGSEELSNSQGIFAENENKAHDIEAASNTLICEGPEGHQFKGGDTAISITENDNPKM*

Protein Length: 396

Fln nts: ATGGGGAAGCCTGCGCTGTCCTGAAAGCTAATTACTTGCGAGTGCTTAAAGGAGGAGAGGAGAAGTTTCAATCCTCACTCTGCATTCACAACTGTAGATAACATAGGGAAGCGTGTTTTGGAGATTGCAGCAAATTTGATTATCA_-_ATGGAAAAGTTAATTGAGAAATCAAAACCCTATGTAGCAATGATATCCCTACAGTTTGGATATGCAGGGATGAATATTATCACGAAAGTTTCTCTTAATAGAGGGATGAATCACTTTGTGCTTGTAGTGTATAGACACGCCGCTGCTACGGTTGTGCTTGCACCTTTTGCCTTCTTCATTGAAAGGAAAGTGCGACCCAAACTCACCTTTCCAATATTCTGGCAAATTTTTGTACTGGGTTTGTTAGGGCCTGTAATCGACCAAAATTTCTACTACCTGGGTCTGAAATTAACATCTCCAACATATGCATGTGCATTGAGTAATGTTCTCCCCGCTATGACTTTCGTGATGGCTCTCATATTCAGGATGGAGAGGGTGAATATAAAAAACATACGCAGTCAAGCAAAGATAGTGGGAACGACTGTGTGCGTCGGGGGAGCAATGCTGATGACGTTGTACAAAGGTCCTATTGTTCCCATGCTTTGGTCTCCACATCATCAATCCCCCGAGACATCTTCCACAACGGCTTCTGCAATTGATAATAAAGACTGGATAATAGGTTCCCTTCTGATAATTGCAGCCACTCTTGCATGGTCAGCTTTGTTCATCCTGCAGGCTGCAGTACTGAAGAAATATTCTGCTCAACTATCTCTTGCCACCTTAATATGTTTTATGGGAACAATACAGGCAACAGTTCTCAGCTTAGCTGTCGTACGTGATTCTTCCCAGTGGGCTTTAGGGTGGGACATCAACCTTCTCACTGCAGTCTATTCTGGAGTGGTGGCGTCAGCAATTGCATATTACGTACAAGGGTTGTGCATCCGCGTAAAAGGACCTGTATTTGCCACAGCATTCAGTCCATTGATGATGATAATTGTGGCCGTTATGGGGTCTATCATTCTCTCTGAGAACATCTTCTTTGGCAGTGTCGTGGGAGGAGTTCTGATTGTAATAGGGTTGTACGCCGTTCTTTGGGGAAAGGTGAAGGATAGCAAGATTTCAGCCGCTAAAAATGGCTCCGAAGAGCTTTCCAATTCTCAAGGAATATTTGCTGAAAATGAAAATAAGGCGCATGATATAGAGGCTGCTTCCAACACGCTAATTTGTGAAGGACCTGAAGGTCATCAATTCAAAGGTGGAGATACGGCCATTTCTATCACTGAAAACGATAATCCAAAAATGTAA___GCAGCGAATTGGGCAGAGTTCCCATGCTCCTCCTCACCATTGTATTCCAACAAAGGGGTTTTCAAAGTAAAATAGGATCAATGTTTGTTGGCGGCGGCGGTTCAATATTACAGTTTTCATCATTGTCTGAGATGAGAAGAGAGATGTATCTATGACGGCTGTGACGCAATTAGTTCTAGCTAAATGAAATACCTCGTCCGGAAAATCCATCGGCGTCCTGGAAAGGTGTTAGAGTTTCCAGTGTAGCGATATTAAACTTTAATAAAATAAAATGAGGATTCGATATACCGAT

Fln Alignment:

sp_v1.1_unigene18004___MEKLIEKSKPYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIKNIRSQAKIVGTTVCVGGAMLMTLYKGPIVPMLWSPHHQSPETSSTTASAIDNKDWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGLCIRVKGPVFATAFSPLMMIIVAVMGSIILSENIFFXXXXXXXXXXXXXYAVLWGKVKDSKISAAKNGSEELSNSQGIFAENENKAHDIEAASNTLICEGPEGHQFKGGDTAISITENDNPKM
A9NWT4_______________MEKLIERSKPYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLTFSIFCQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVIALLFRMENVNIKKLRSQAKIVGTIVCVGGAMLMTLYKGPIVKMVWSAHHQSPQTSA--AAAIDNKNWIIGSVLIIAATLAWSGLFILQAAVLKKYSAQLSLATLICFLGTLQATVLSLAVVRDPSQWALGWDLNLLTAVYSGVVASAIAYYVQGLCMRVKGPVFATAFSPLMMIIVAIMASIILAENIFLGSVLGGVLIVIGLYAVLWGKVKDSKILTDKNSTEVLSNSQVMLPENQNKADDIEAASKNLMCKGPQAHQFNTGDTAISITENNNPKM

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
38	33		66		0.997452
39		66		33	0.997452
41	66		33		0.997452
171	25		75		0.996473
391	85		14		0.993533
409	50		50		1.0
428		62		37	1.0
461		37		62	1.0
463	12	25	62		1.0
478		28	42	28	1.0
519	25		75		1.0
571	20		80		0.995493
630	16		83		0.994512
653	50		50		1.0
703	20		80		0.995493
724	33			66	1.0
727		66	33		1.0
736	33			66	1.0
745		66		33	1.0
746		66		33	1.0
899		75		25	0.996473
921			75	25	0.996473
1035		33	66		0.997452
1051			25	75	1.0
1085	12		87		0.992554
1161	11		88		0.923564
1187	20		80		1.0
1195		85		15	1.0
1228	10		90		0.999898
1259		89	10		0.999919
1266		16	83		1.0
1474	40			60	1.0
1512	73	26			1.0
1522		60	40		1.0
1541		23		76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain