SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18003

Length: 1760 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18003

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-1,4-glucan-protein synthase (UDP-forming) n=1 Tax=Medicago truncatula RepID=Q2HV87_MEDTR	-	-	56%
FL-Next	sp=Probable UDP-arabinopyranose mutase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	73%
Blast2go	N-Glycan biosynthesis	00510	73%
Blast2go	Mucin type O-Glycan biosynthesis	00512	73%
Blast2go	Various types of N-glycan biosynthesis	00513	73%
Blast2go	Other types of O-glycan biosynthesis	00514	73%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	73%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	73%
Blast2go	Lipopolysaccharide biosynthesis	00540	73%
Blast2go	Peptidoglycan biosynthesis	00550	73%
Blast2go	Glycerolipid metabolism	00561	73%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	73%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Carotenoid biosynthesis	00906	73%
Blast2go	Zeatin biosynthesis	00908	73%
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Anthocyanin biosynthesis	00942	73%
Blast2go	Flavone and flavonol biosynthesis	00944	73%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	73%
Blast2go	Betalain biosynthesis	00965	73%
Blast2go	Biosynthesis of type II polyketide products	01057	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	73%
Blast2go	cellular process	GO:0009987	Biological Process	73%
Blast2go	response to salt stress	GO:0009651	Biological Process	73%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FFD2

Fln msg:

Fln protein: MVLDINPEEVDVVISAIHPDLSFLEAWRPFLSPYHLIIVQDPELEQNVEIPSGFDHTLYTKHDMERVLGSGVLSSLGFRGHSCRSFGYLVSKKKYIFSLDDDCLPAKDPSGNLGNALEHHLINLKTPSTPFFFNTLYDPYRKGSDFVRGYPFSLRQGVPCAISCGLWLNFPDYDAPTQIRKPEERNTQYVDAVMTVPSGALFPMSGINIAFDREIIGPAMFSGLGSSGSGKTALSRHSTLEDIWCGFCCKIICDHLRYGIKTGLPYVWRKELGDPVANLEGDAKGAQWLEEVVPFFQTVRLPRSALTVEDCFVEIGKQVKENLKNADPIFGEIGSMMEEWIKAWKSVSS*

Protein Length: 351

Fln nts: GTTCTTAATCTCCTCCAGCTCTCTATTTTTGGCCAACAGCTCCGGGAAAATGGGGTAGAGCTGACACTAAAAGTGACCTGGCCTGGTAGCAGCTCAAGTTGAAGTGTGAGGCTAAATTGTTGCAGGAAAGGCCTATGCCCTTTTTGGTCTCAGGAGAGAAACAACATAGGATTGTTCACCACTAATATCAACAAGCCCCAGCATCACTGTCAGGCCCAAATCAGCTAAAAAATCAGGTACACATTCTTATTTCAGACCTCAATCTGAAAAACCCAGTTGTCAAATTTTCACTTTTCAAGCTCAGATCTGCTTAAAACAAAATAGTCTCGACATACCCAGAAAGATTTCAAG_-_ATGGTTTTGGATATCAATCCAGAGGAGGTAGACGTCGTGATCTCTGCTATTCACCCTGATCTGAGTTTCTTAGAAGCATGGAGACCTTTTTTATCCCCTTACCATCTTATCATAGTTCAGGACCCTGAGCTTGAGCAGAATGTTGAAATTCCCTCAGGGTTTGATCACACTTTGTATACAAAGCATGACATGGAAAGAGTATTGGGTTCCGGTGTTTTATCCTCATTGGGCTTCAGAGGTCATAGTTGCAGGTCATTTGGGTACCTTGTTTCTAAGAAAAAGTACATTTTTTCATTAGATGATGACTGCCTTCCTGCTAAGGATCCAAGTGGGAATTTGGGTAATGCCTTAGAACATCACCTGATAAATCTCAAAACCCCCTCGACCCCATTTTTCTTCAATACATTGTATGACCCTTACAGGAAAGGGTCAGATTTTGTGAGAGGGTACCCATTTAGTCTTAGGCAGGGGGTCCCATGTGCCATTTCATGTGGGTTGTGGTTAAATTTTCCCGATTATGATGCACCCACACAGATCCGGAAGCCGGAAGAAAGGAACACTCAATATGTTGATGCAGTCATGACTGTTCCCAGTGGGGCCTTGTTTCCTATGAGTGGCATTAACATTGCATTCGATAGAGAAATCATTGGTCCTGCAATGTTCTCTGGGCTCGGTAGTTCTGGATCTGGCAAAACTGCGTTGTCCCGGCACAGTACTCTGGAAGACATTTGGTGTGGTTTCTGCTGCAAGATTATATGTGATCACCTTAGGTATGGGATCAAAACAGGGCTGCCTTATGTGTGGCGAAAGGAACTTGGGGATCCCGTGGCTAACCTTGAGGGAGATGCAAAGGGTGCTCAGTGGCTTGAAGAGGTTGTGCCATTTTTCCAAACAGTTCGCCTGCCTCGCTCTGCCCTCACTGTGGAAGATTGCTTTGTGGAAATCGGTAAACAAGTCAAGGAGAACCTCAAGAATGCGGATCCTATCTTTGGGGAAATTGGCTCCATGATGGAGGAATGGATCAAAGCATGGAAGTCAGTCTCATCTTGA___TTCATTTCATTTTTAATGCAAAGTAATCCGTGTTTCTAAACTATCCAGAGTGTTGCTACGTACTCTTGAACAAAAGGTTGGCCCTTCAAATTTTCTCTGCATAGATAATACTAATCATTCCTGTTTAGAGATTGGCGCACAAGCAATTTATCAGGATTAACATTGAGTAATTTCATATTGCATAGTTGGTATAAGCTTTAGAAGTTTAGGTATCTGAATAGAACTGGTTCATTTCAGATTTTGGTTGTTTAGGTACGAGGACCTTGTCTTCAGTTCTCAATCTAAGATTTCTTTGATGTAGAGCCATTTGAATATTTAATATTGAGATAAACTATTTAAGTGACGAAAAGGCCTTCTGG

Fln Alignment:

sp_v1.1_unigene18003___DINPEEVDVVISAIHPDLS-FLEAWRPFLSPYHLIIVQDPELEQNVEIPSGFDHTLYTKHDMERVLGSGVLSSLGFRGHSCRSFGYLVSKKKYIFSLDDDCLPAKDPSGNLGNALEHHLINLKTPSTPFFFNTLYDPYRKGSDFVRGYPFSLRQGVPCAISCGLWLNFPDYDAPTQIRKPEERNTQYVDAVMTVPSGALFPMSGINIAFDREIIGPAMFSGLGSSGSGKTALSRHSTLEDIWCGFCCKIICDHLRYGIKTGLPYVWRKELGDPVANLEGDAKGAQWLEEVVPFFQTVRLPRSALTVEDCFVEIGKQVKENLKNADPIFGEIGSMMEEWIKAWKSVSS
Q9FFD2_______________EINKNEVDIVIGALNADLTQFLTSWRPFFSGFHLIVVKDPELKEELNIPEGFDVDVYSKTDMEKVVGAS--NSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALKTEKRNTAYVDAVMTVPAKAMLPISGINIAFNRELVGPALVPALRLAGEGKV---RWETLEDVWCGMCLKHISDHLGYGVKTGLPYVWRNERGDAVESLRKKWEGMKLMEKSVPFFDSLKLPETALKVEDCVIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNSVNS

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
52	25		75		0.996473
53		25	50	25	0.995533
54	25		75		0.996473
56		25	25	50	0.995533
57	75	25			0.996473
64	75	25			0.996473
66	75	25			0.996473
74		5	25	70	1.0
80			75	25	1.0
95		75	25		1.0
128	70		30		1.0
154		22	77		1.0
179		90		9	0.999842
180	27	72			1.0
192	15	85			1.0
203	85		15		1.0
240		85		15	1.0
265			4	95	0.996599
266			95	4	0.997218
267	95	4			0.997494
268	90	4	4		0.960255
269	90	4		4	0.960255
270	90		4	4	0.960255
271	95			4	0.997494
272		95	4		0.997494
273		95	4		0.997494
274		94		5	0.997984
275	89			10	1.0
277			5	94	0.9982
278	5			94	0.9982
279		5	94		0.9982
293			33	66	1.0
357	23			76	1.0
438		16		83	0.994512
849	16		83		0.994512
964	87		12		0.992554
1213		11		88	0.999952
1424	17		82		1.0
1469		3	96		0.991825
1473	52		45		1.0
1537		95		4	0.996599
1541		95	4		0.996599
1555	4		95		0.996599
1613	59			37	1.0
1623	94			5	0.998894
1714	33		8		1.0
1727	90	10			0.90298
1728		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain