SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17992

Length: 1130 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17992

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	-	-	3.0e-18	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	high mobility group family protein	-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	77%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADC5

Fln msg: your sequence is shorter than subject: 227 - 286

Fln protein: ASVSTFMNSRETDFRTAMLDHRLGRKRKRKEMSRKDPNAPRQNRTGYNFFFAEQRARLKSVQPDKDRAISKMIGDLWNRLSEDDKSPYQERGLVDKERYKREMREYKERLRLECQGAVGTSGHQQCLSTARKYDPLSNDAIQEGQLRLLDSKPFQGTVQPISETHCSDTGISEKLSCGSGTGISEKFSCGSDIGLVEDQPFKNHQSPKGESHVTVQEQGGHGVSSP*

Protein Length: 228

Fln nts: TGCAAGTGTGTCTACATTTATGAATAGTCGGGAGACAGACTTTAGAACTGCTATGCTGGATCACAGACTAGGCCGGAAGCGAAAGAGAAAAGAAATGTCAAGGAAGGATCCAAATGCCCCAAGACAGAACAGAACTGGTTATAATTTTTTCTTTGCTGAGCAACGAGCCAGGCTTAAGTCAGTTCAACCAGATAAGGATAGAGCGATAAGCAAGATGATTGGTGATTTGTGGAATCGGCTTTCAGAGGATGATAAATCACCTTATCAAGAGCGAGGTTTGGTGGATAAAGAGCGTTATAAGAGAGAGATGCGGGAATACAAGGAAAGACTGAGACTTGAGTGCCAGGGTGCAGTGGGAACCAGTGGCCATCAACAGTGTTTAAGTACTGCAAGGAAATACGACCCTCTCAGCAATGATGCGATACAAGAAGGGCAATTAAGACTACTGGACAGTAAACCATTCCAAGGGACAGTTCAGCCAATATCAGAGACCCATTGTTCTGACACAGGCATCTCGGAGAAACTTTCTTGTGGTTCTGGCACTGGCATCTCGGAGAAATTTTCTTGTGGTTCTGATATAGGCCTTGTTGAGGACCAGCCTTTTAAGAACCATCAATCTCCAAAGGGTGAAAGTCATGTTACAGTGCAGGAACAAGGTGGCCATGGGGTTAGTAGCCCTTGA___CATGTATGACCCCACTTCTGAAAGAAAACTAACCGGGTGGGTGCCGTAGGATTCCTATTGGAAAATAACTTTGAATTCCAGACCAATACAAGATGCTCTAGGGTGAAAAGTGACAGTTGATTTATGTCTCTTATACTGTTCAATCTTGAGTGCAGCAATGCATGCTTTGTTGCAAATTAGACAAGCCTACTAACCGTGTAACACAAAATGAGGACTTTGCTGACACTGCATAGATAGGAAAACATGTAAAGATTTATCAGCTCGAACCTGACATGTATTATCCTGCAACTGTTGCTGACAGACATAACTTATAAGTAGTTTGCAGGAAGATATTGAGAATTACCGCGGCATATAGATGTCTTTAAGTTTCAGGATAGTTACTTTTCTGTTTAGTATTGTGTAGTCTTTTTTGTTAGAATTGTTATGGACTCCACACATTCAATGTGTA

Fln Alignment:

sp_v1.1_unigene17992___ASVSTFMNSRETDFRTAMLDHRLGRKRKRKEMSRKDPNAPRQNRTGYNFFFAEQRARLKSVQPDKDRAISKMIGDLWNRLSEDDKSPYQERGLVDXXXXXXXXXXXXXXXXXXCQGAVGTSG-HQQCLSTARKYDPLSNDAIQEGQLRLLDSKPFQGTVQPISETHCSDTGISEKLS------------CGSGTG------------------------ISEKFSCGSDIGLVEDQPFKNHQSPKGESHVTVQEQGGHGVSSP
D5ADC5_______________ASVSTFMNSRETDFRTSMLDHRLGRKRKRKEMSRKDPNAPRQNKTGYNFFFAEQRARLKSVQPDKDRAISKMIGDLWNRLSEDDKSPYQERGLVDKERYKREMREYKERLRLESQGAVGTSGFHPHSLRTARKYDPLSNDVTQEGQLRLQGSKPLQVQVQPISEIRCSGTGISENLSGGSGTGISEKPSCGSGMGISEKLSCGSGMGISEKLSCGSGMSISEKLSCGSGIGLVEDQPSKNHPSPKGESHVTVQEQGVHGVSSP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
16	75		25		0.996473
18		25		75	0.996473
19			25	75	0.996473
24	75	25			0.996473
27	75			25	0.996473
29			25	75	0.996473
31			75	25	0.996473
33			75	25	0.996473
34	75	25			0.996473
38	75			25	0.996473
39		25	75		0.996473
41		75		25	0.996473
121	25	75			0.996473
685	90		10		0.90298
753	10			90	0.90298
755			10	90	0.90298
757	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain