SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17985

Length: 572 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene17985
ATGGGGGCTGTGCAATTCAAGCTGGAGCTCATGTATCTGGTGCATTCTACCCAGCTTCCCCTTCCTATAGATCAATCAATATGTCAATTGATGATACGTTTTTCCCATTAGTCACTGCAAGTGTCCCTTTTCTGTCAATGGATTCAACAATAAACTGGGACATTGCCTTGAAAGATATGAATGCAGATGCAGAGAAACTGCTTACAATGAACAATGGCAGTGGGAGAAACATATCATCAGTGACATTTGACCAAACCAAGAAGACAGTGACCCTTTTCTGCCAGGATTTGACAAGTCAGAAATTAAACTGTCCCAATGGAGGGGAGGATCAGAATTGCTGGTAGAATCGGGTGATCAAAGACGTGTCATTACTTTGCCCTCGAAAATGCAAGGGAAGGTAGCAGGAGCAAAATTTGAGAATAGAAATCTTGTGATAACACTGAAATAGATATGAGATTCTGTTGTAACCATGTTGCTAGTGATATTTATATTGGAAAGAGACGGATCTAATTCTGCAAGAAAAAGTATTCTGATCCTTTGATCCAACCCGATGTTTTGAGTTCTTACATTCT

Ace file of the UniGene sp_v1.1_unigene17985 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anion-transporting ATPase (EC:3.6.3.16); K01551 arsenite-transporting ATPase [EC:3.6.3.16]	-	-	2.0e-08	57%
FL-Next	sp=Uncharacterized protein At1g26090, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	atp binding protein	-	-	5.97039e-27	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Arsenite-transporting ATPase.	EC:3.6.3.16	-	2.0e-08	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	5.97039e-27	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6DYE4

Fln msg: Overlapping hits, possible frame ERROR between 278 and 275, your sequence is shorter than subject: 149 - 455

Fln protein: GGCAIQAGAHVSGAFYPASPSYRSINMSIDDTFFPLVTASVPFLSMDSTINWDIALKDMNADAEKLLTMNNGSGRNISSVTFDQTKKTVTxxxPGFDKSEIKLSQWRGGSELLVESGDQRRVITLPSKMQGKVAGAKFENRNLVITLK*

Protein Length: 150

Fln nts: ATGGGGGCTGTGCAATTCAAGCTGGAGCTCATGTATCTGGTGCATTCTACCCAGCTTCCCCTTCCTATAGATCAATCAATATGTCAATTGATGATACGTTTTTCCCATTAGTCACTGCAAGTGTCCCTTTTCTGTCAATGGATTCAACAATAAACTGGGACATTGCCTTGAAAGATATGAATGCAGATGCAGAGAAACTGCTTACAATGAACAATGGCAGTGGGAGAAACATATCATCAGTGACATTTGACCAAACCAAGAAGACAGTGACCxxxxxxxxxCCAGGATTTGACAAGTCAGAAATTAAACTGTCCCAATGGAGGGGAGGATCAGAATTGCTGGTAGAATCGGGTGATCAAAGACGTGTCATTACTTTGCCCTCGAAAATGCAAGGGAAGGTAGCAGGAGCAAAATTTGAGAATAGAAATCTTGTGATAACACTGAAATAGATATGAGATTCTGTTGTAACCATGTTGCTAGTGATATTTATATTGGAAAGAGACGGATCTAATTCTGCAAGAAAAAGTATTCTGATCCTTTGATCCAACCCGATGTTTTGAGTTCTTACATTCT

Fln Alignment:

sp_v1.1_unigene17985___GCAIQAGAHVSGAFYPASPSYRSINMSIDDTFFPLVTASVPFLSMDSTINWD-IALKDMNADAEKLLTMNNGSGRNIS-SVTFDQTKKTVTLxLPGFDKSEIKLSQWRGGSELLVESGDQRRVITLPSKMQGKVAGAKFENRNLVITLK
Q6DYE4_______________GCTVQAGSHVSGAFAISSSHLTSQIPKADFVPLPFASASVPFTI--TGLDWDKILLDQANSSIRELLSETVSHGTSLTQTVMFDTAKKLVTLxMPGFEKSEIKLYQYRGGSELLIEAGDQRRVIHLPSQIQGKVGGAKFVDRSLIVTMR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain