SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17979

Length: 2168 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene17979
TGGATGCTCTGCGGATCGGCTAGTTTAAAGGAGGAGTTCCCTTATCTGCAAGCATTTTCCGACATTAAGCAGGGCTCGAGGGAGCAGATCATGCTTGATTGGTCCCGGGGAAGGAGATTCGCATTTCTGAAATTTGCCTTTAAGCTCTTCAAGATCTGCAGTGTGTTCAGATTCTACACCGTGGTGGATGAGAATGCCGAGAATCCAGCATGGAAAGGCATCGGATATTCCCCGCCGGAACCTGAAACAGATAGTGTGGCGAGCGGCCGGCCGTTGGAAAAGGGAGTGATCGATTTGACTTCTGCTTTGCAGCAAGACCTGCCGAGACTGTTTCAAGATAGGGGTTTTACTGTAGCAGAAGAAGAAAAATTGAGTGGCGAGAAGAAAGCTTGGAAAGTAGAATGTGATGCCGTGGTTATAGGCTCGGGTTCGGGTGGGGGAGTGGCAGCCGGCGTTCTTGCCAAGGCCGGTTACAGAGTTATCATTCTTGAAAAAGGACAAATACTACGCCCGGGACGATTTAACCCTCCTGGAAGGCCCCTCGTTTGATCAGATGTACGAATCCGGAGGCATTCTTCCCACTAACGACGGTAAAGTCCTCATCATGGCCGGTGCTACTGTGGGGGGCGGATCCGCCATAAACTGGTCTGCCTCTATCCGCACGCCTCCCCACGTGCTCAAAGAATGGTCCAAACAACACGACTTGCCCCTGTTCGAATCCCAGGACTATCAGGACGCCATGAATGCCGTCTGCAGGCGCCTTGGGGTTCAAGACGGATGCTCTAAAGAGAGCTTCCAAAATAGCGTTTTGAGTACAGGCTGTGCCAAATTAGGGTTTCATTTCGAGAAAGTTCCCCGGAATTCAACGGAGGATCATTTCTGCGGCTCCTGCTGTTGTGGTTGCAGGTCGGGAAACAAGAAAGGGGCGGACGAGACGTGGCTAGTGGATGCTGTGGATTCCGGCTCGCTAATTTTAGCGGGATGTAGAGCTGAAAAGATTTTGTGCCAAAAGATCCCAGCAAACGGGAAGCAAAGGGCCGCCGGTGTCGTGGCTACTTTTGGGGCAAAAGAAAGAAGAAGAATATTCATACAGGCCAAGGTGACCGTAGCTGCTTGCGGTTCTCTTCTGACGCCACCGCTTCTCCGCTCCAGCGGCCTCCAGAACCCTAACATAGGTAGAAATCTTCACCTCCATCCTGTCCAAATGGCTTGGGGTTTCTTCCCGGAAAATCAAGAACCAGCGGGCAAACCCCACGAGGGCGGTATCATCACCACCATTTGTAAAGAAGGCGCCAAGTGGGAGCAATCAGGGTATGGTACCATTATCCAGACGCCGGCAATTGCTCCCGGTTCCTTCGCCGCCATGATTCCCTGGATCTCCGGCCTGGATATGAAAGACCGCATGCGAAAATATCATCGGACGGCCCACGTGTTCTGTTTGGCTCGTGACCGCGGCAGCGGAGTCATTGGCGGGGAAAAGGATATCGCCTACAGGCTTGCTGAGCCGGATAAAGAAAATTTAAAGGAGGGGCTGAGGAGATGCCTCCGGATCTTGATCGCTGCCGGTGCCACAGAGGTGGGGACGCATCGTAGCGACGGGGAGCGTCTGATTGTTAAGGGCGCCACCGATGATGAAATTGAGGAGTTCTTGAACAACCAGGGGAAGGGAAGGCGAGGAGTGTGGCCGACCCTTTTCTCTGCTCATCAGATGGGGAGCTGTAGAATGGGCAAAGACGAAGTCTCTGGTGGCGTGGACTGGAAGGGCGAGAGCTGGGAAGTTGAAGGACTGTTTGTCTGTGATGGCAGCTTGTTGCCAACCTCTGTTGGGGTGAATCCCATGATCACTATTCAATCCGTTGCTCTCTGTGTAGCTAAGTATATCCTGCAATTCCTGCGGACAAATTCGTCTCAGGATTTGACCCGTGGCCACTGAACACGCGTAATGTGATGTGGAAGACATGCATGAAGTGTTAAATTTATTCTCAAAAGTTCCAGGTAACAAGGCAGTTGATTTAGTTCCCGTTTAATAAATGATACAAATTCTATAAATATCTATAGATATCGTCGTTATTATTCAAATCCTAATTTTATAGATATTTGTATGACTGTAATTCACGTATATATTTTTTATATTGTGATAATGATAGTTTCACTAATGTGTCAATTTC

Ace file of the UniGene sp_v1.1_unigene17979 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol oxidase (Fragment) n=1 Tax=Glycine max RepID=C6F118_SOYBN	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	alcohol oxidase	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	70%
Blast2go	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ84

Fln msg: Overlapping hits, possible frame ERROR between 501 and 488, your sequence is shorter than subject: 645 - 743

Fln protein: WMLCGSASLKEEFPYLQAFSDIKQGSREQIMLDWSRGRRFAFLKFAFKLFKICSVFRFYTVVDENAENPAWKGIGYSPPEPETDSVASGRPLEKGVIDLTSALQQDLPRLFQDRGFTVAEEEKLSGEKKAWKVECDAVVIGSGSGGGVAAGVLAKAGYRVIIxxxxxxYYARDDLTLLEGPSFDQMYESGGILPTNDGKVLIMAGATVGGGSAINWSASIRTPPHVLKEWSKQHDLPLFESQDYQDAMNAVCRRLGVQDGCSKESFQNSVLSTGCAKLGFHFEKVPRNSTEDHFCGSCCCGCRSGNKKGADETWLVDAVDSGSLILAGCRAEKILCQKIPANGKQRAAGVVATFGAKERRRIFIQAKVTVAACGSLLTPPLLRSSGLQNPNIGRNLHLHPVQMAWGFFPENQEPAGKPHEGGIITTICKEGAKWEQSGYGTIIQTPAIAPGSFAAMIPWISGLDMKDRMRKYHRTAHVFCLARDRGSGVIGGEKDIAYRLAEPDKENLKEGLRRCLRILIAAGATEVGTHRSDGERLIVKGATDDEIEEFLNNQGKGRRGVWPTLFSAHQMGSCRMGKDEVSGGVDWKGESWEVEGLFVCDGSLLPTSVGVNPMITIQSVALCVAKYILQFLRTNSSQDLTRGH*

Protein Length: 646

Fln nts: TGGATGCTCTGCGGATCGGCTAGTTTAAAGGAGGAGTTCCCTTATCTGCAAGCATTTTCCGACATTAAGCAGGGCTCGAGGGAGCAGATCATGCTTGATTGGTCCCGGGGAAGGAGATTCGCATTTCTGAAATTTGCCTTTAAGCTCTTCAAGATCTGCAGTGTGTTCAGATTCTACACCGTGGTGGATGAGAATGCCGAGAATCCAGCATGGAAAGGCATCGGATATTCCCCGCCGGAACCTGAAACAGATAGTGTGGCGAGCGGCCGGCCGTTGGAAAAGGGAGTGATCGATTTGACTTCTGCTTTGCAGCAAGACCTGCCGAGACTGTTTCAAGATAGGGGTTTTACTGTAGCAGAAGAAGAAAAATTGAGTGGCGAGAAGAAAGCTTGGAAAGTAGAATGTGATGCCGTGGTTATAGGCTCGGGTTCGGGTGGGGGAGTGGCAGCCGGCGTTCTTGCCAAGGCCGGTTACAGAGTTATCATTxxxxxxxxxxxxxxxxxxTACTACGCCCGGGACGATTTAACCCTCCTGGAAGGCCCCTCGTTTGATCAGATGTACGAATCCGGAGGCATTCTTCCCACTAACGACGGTAAAGTCCTCATCATGGCCGGTGCTACTGTGGGGGGCGGATCCGCCATAAACTGGTCTGCCTCTATCCGCACGCCTCCCCACGTGCTCAAAGAATGGTCCAAACAACACGACTTGCCCCTGTTCGAATCCCAGGACTATCAGGACGCCATGAATGCCGTCTGCAGGCGCCTTGGGGTTCAAGACGGATGCTCTAAAGAGAGCTTCCAAAATAGCGTTTTGAGTACAGGCTGTGCCAAATTAGGGTTTCATTTCGAGAAAGTTCCCCGGAATTCAACGGAGGATCATTTCTGCGGCTCCTGCTGTTGTGGTTGCAGGTCGGGAAACAAGAAAGGGGCGGACGAGACGTGGCTAGTGGATGCTGTGGATTCCGGCTCGCTAATTTTAGCGGGATGTAGAGCTGAAAAGATTTTGTGCCAAAAGATCCCAGCAAACGGGAAGCAAAGGGCCGCCGGTGTCGTGGCTACTTTTGGGGCAAAAGAAAGAAGAAGAATATTCATACAGGCCAAGGTGACCGTAGCTGCTTGCGGTTCTCTTCTGACGCCACCGCTTCTCCGCTCCAGCGGCCTCCAGAACCCTAACATAGGTAGAAATCTTCACCTCCATCCTGTCCAAATGGCTTGGGGTTTCTTCCCGGAAAATCAAGAACCAGCGGGCAAACCCCACGAGGGCGGTATCATCACCACCATTTGTAAAGAAGGCGCCAAGTGGGAGCAATCAGGGTATGGTACCATTATCCAGACGCCGGCAATTGCTCCCGGTTCCTTCGCCGCCATGATTCCCTGGATCTCCGGCCTGGATATGAAAGACCGCATGCGAAAATATCATCGGACGGCCCACGTGTTCTGTTTGGCTCGTGACCGCGGCAGCGGAGTCATTGGCGGGGAAAAGGATATCGCCTACAGGCTTGCTGAGCCGGATAAAGAAAATTTAAAGGAGGGGCTGAGGAGATGCCTCCGGATCTTGATCGCTGCCGGTGCCACAGAGGTGGGGACGCATCGTAGCGACGGGGAGCGTCTGATTGTTAAGGGCGCCACCGATGATGAAATTGAGGAGTTCTTGAACAACCAGGGGAAGGGAAGGCGAGGAGTGTGGCCGACCCTTTTCTCTGCTCATCAGATGGGGAGCTGTAGAATGGGCAAAGACGAAGTCTCTGGTGGCGTGGACTGGAAGGGCGAGAGCTGGGAAGTTGAAGGACTGTTTGTCTGTGATGGCAGCTTGTTGCCAACCTCTGTTGGGGTGAATCCCATGATCACTATTCAATCCGTTGCTCTCTGTGTAGCTAAGTATATCCTGCAATTCCTGCGGACAAATTCGTCTCAGGATTTGACCCGTGGCCACTGAACACGCGTAATGTGATGTGGAAGACATGCATGAAGTGTTAAATTTATTCTCAAAAGTTCCAGGTAACAAGGCAGTTGATTTAGTTCCCGTTTAATAAATGATACAAATTCTATAAATATCTATAGATATCGTCGTTATTATTCAAATCCTAATTTTATAGATATTTGTATGACTGTAATTCACGTATATATTTTTTATATTGTGATAATGATAGTTTCACTAATGTGTCAATTTC

Fln Alignment:

sp_v1.1_unigene17979___WMLCGSASLKEEFPYLQAFSDIKQGSREQIMLDWSRGRRXXXXXXXXXXXKICSVFRFYTVVDENAENPAWKGIGYSPPEPETDSVASGRPLEKGVIDLTSALQQDLPRLFQDRGFTVAEEEKLSGEKKAWKVECDXXXXXXXXXXXXXXXXXXXXGYRVIIxxxxxYYARDDLTLLEGPSFDQMYESGGILPTNDGKVLIMAGATVGGGSAINWSASIRTPPHVLKEWSKQHDLPLFESQDYQDAMNAVCRRLGVQDGCSKESFQNSVLSTGCAKLGFHFEKVPRNSTEDHFXXXXXXXXXXGNKKGADETWLVDAVDSGSLILAGCRAEKILCQKIPANGKQRAAGVVATFGAKERRRIFIQAKVTVAACGSLLTPPLLRSSGLQNPNIGRNLHLHPVQMAWGFFPENQEPAGKPHEGGIITTICKEGAKWEQSGYGTIIQTPAIAPGSFAAMIPWISGLDMKDRMRKYHRTAHVFCLARDRGSGVIGGEKDIAYRLAEPDKENLKEGLRRCLRILIAAGATEVGTHRSDGERLIVKGATDDEIEEFLNNQGKGRRGVWPTLFSAHQMGSCRMGKDEVSGGVDWKGESWEVEGLFVCDGSLLPTSVGVNPMITIQSVALCVAKYILQFLRTNSSQDLTRGH
B8LQ84_______________WLLCGSASLKKEFPYLQPFSDVQQVSREQILLDWSRGRRITFLKFAFKLFKICCLFTFYTVADENAENPAWKGIGYSPPKPETDRVASGRPLEKGVIDLSSASEQDLPKLFQDRGFTVTEEENLSGKEKAWKVECDAVVVGSGSGGGVAAGVLAKAGYRVIVxxxxxYYARDDLTLLEGPSFDQMYESGGILPTNDGKVLVMAGATVGGGSAINWSASIRTPPHVLKEWSKQHGLPLFESHDYQDAMNAVCGRLGVQDGCSKESFQNSVLSTGCAKLGFRFEKVPRNSTEDHFCGSCCFGCRKGNKKGADETWLVDAMNSGSLILAGCKAEKVLCQEIPGSWKQRAAGVVAAFGPK-RRSIFVQAKVTVAACGSLLTPLLLRSSGLRNPNIGRNLHLHPVQMAWGFFPENKEPAGKPHEGGIITTICKEGAKWEQSGYGTIIQTPAIAPGSFASMIPWTSGLDMKERMQKYHRTAHVFCLARDRGSGSVGGEKDLDYRFAESDKDNLKEGLRRCVQILIAAGATEVGTHRSDGERLAVKGATDDEIEEFLNNKGKGRRGVWPTFFSAHQMGSCRMGKDEESGGVDWKGESWEVEGLFVCDGSLLPTSVGVNPMITIQSLAFCVANYILQFLRTNSSQSSTCGH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
187			33	66	1.0
732	85	14			0.993533
733	85	14			0.993533
735		85		14	0.993533
1071	87	12			0.992554
1074		12		87	0.992554
1096		14		85	0.993533
1110		85		14	0.993533
1238		83		16	0.994512
1402		14	85		0.993533
1404	83	16			0.994512
1406	16	83			0.994512
1407		83		16	0.994512
1408		83	16		0.994512
1409	83			16	0.994512
1411		16	83		0.994512
1412			83	16	0.994512
1416		83	16		0.994512
1418			83	16	0.994512
1419		83	16		0.994512
1803	20			60	0.99255
1842		83	16		0.994512
1924	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain