SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17974

Length: 567 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene17974
ACTTGCACCTGAAAGCTACAGGCAAGCCAGTGATAATTTGAGTAGTTTTGGGGGTACTGGCACAGGATCCATTGAAGATGTTTTGCAGAATATGGATCAAAATCTGTTTCCTATGCTACATAAACTTTGTCCTAAACCACGAATGCTTGTCTGTGCTCCGTCGAATGCTGCTACAGATGAGTTGTTGCAGCGTGTCCTTGATCGTGGTTTTATTGATGGAGAAATGAAGATTTACCGTCCTGATGTTGCTAGGGTCGGTGTGGATTCACAAAATCGTGCTGCACAGGCAGTATCTGTGGAGCGGAGGGCTGATCACCTCTTAGTCAAGGGACGTGAGGAAGTAATAGGGCATATGCAACAGCTCCGTGCTAGAGAGGGACACTTAGTTCAGCAAATCATTGCTCTCCGGAGGGACTTGAGTGCAACAGCTGCTGCTGGCCGTTCCCAAGGAACAGTTGGGGTTGATCCTGAAGTTCTGGTTGCACGTGATCAGAGTCGTGATGCAATGTTGCAAAATCTTGCAGCAGTAGTGGAAGAACGGGATAAAGTATTAGTTGAGTTATCTCG

Ace file of the UniGene sp_v1.1_unigene17974 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing endonuclease positive effector sen1, putative n=1 Tax=Ricinus communis RepID=B9RJG9_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	73%
Blast2go	at4g30100-like protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	endonuclease activity	GO:0004519	Molecular Function	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8BFH0

Fln msg: Distance to subject end: 423 aas, your sequence is shorter than subject: 188 - 1360

Fln protein: LAPESYRQASDNLSSFGGTGTGSIEDVLQNMDQNLFPMLHKLCPKPRMLVCAPSNAATDELLQRVLDRGFIDGEMKIYRPDVARVGVDSQNRAAQAVSVERRADHLLVKGREEVIGHMQQLRAREGHLVQQIIALRRDLSATAAAGRSQGTVGVDPEVLVARDQSRDAMLQNLAAVVEERDKVLVELS

Protein Length: 189

Fln nts: ACTTGCACCTGAAAGCTACAGGCAAGCCAGTGATAATTTGAGTAGTTTTGGGGGTACTGGCACAGGATCCATTGAAGATGTTTTGCAGAATATGGATCAAAATCTGTTTCCTATGCTACATAAACTTTGTCCTAAACCACGAATGCTTGTCTGTGCTCCGTCGAATGCTGCTACAGATGAGTTGTTGCAGCGTGTCCTTGATCGTGGTTTTATTGATGGAGAAATGAAGATTTACCGTCCTGATGTTGCTAGGGTCGGTGTGGATTCACAAAATCGTGCTGCACAGGCAGTATCTGTGGAGCGGAGGGCTGATCACCTCTTAGTCAAGGGACGTGAGGAAGTAATAGGGCATATGCAACAGCTCCGTGCTAGAGAGGGACACTTAGTTCAGCAAATCATTGCTCTCCGGAGGGACTTGAGTGCAACAGCTGCTGCTGGCCGTTCCCAAGGAACAGTTGGGGTTGATCCTGAAGTTCTGGTTGCACGTGATCAGAGTCGTGATGCAATGTTGCAAAATCTTGCAGCAGTAGTGGAAGAACGGGATAAAGTATTAGTTGAGTTATCTCG

Fln Alignment:

sp_v1.1_unigene17974___LAPESYRQASDNLSSFGGT-GTGSIEDVLQNMDQNLFPMLHKLCPKPRMLVCAPSNAATDELLQRVLDRGFIDGEMKIYRPDVARVGVDSQNRAAQAVSVERRADHLLVKGREEVIGHMQQLRAREGHLVQQIIALRRDLSATAAAGRSQGTVGVDPEVLVARDQSRDAMLQNLAAVVEERDKVLVELS
B8BFH0_______________LAPESYKQVSGNTSNSSETVAAGSIDEVLQSMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTDQLLMKGRDEVIGWLQQLKCREQQLSQEIALLQRELTMVAAAGRSQGSVGVDPDVLAQRDRSRDFLLQKLAASVESRDKVLVEMS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
158		16		83	0.994512
161	16		83		0.994512
162			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain