SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17964

Length: 491 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene17964
GCAAAGTTCTGCTGCTTTCTGATGGCAACGGGCAATTCACGAAGGCCATGGGGGTTTCCGTCGATTTAAGCAATAAGCCGGTGGGTTTAGGTGTGCGATCGCGCAGGTACTCGTTACTGGCGGACAATGGGGTTGTTAAAGTGCTCAATTTAGAGGAAGGCGGGTCGTTTACCGTTAGCGGGGCCGATGATATATTGAAGGCCCTGTGAGCGTTAGGCTTCAGCGGGTTCTTTTTGCAGGATTATTGTTATCAATGATGGATTCACAGTAAATCGATGACCGATGGTTGAGGTATTATCAACAGGCTTTATTTAGATGCCTGTTTCGCTTGCCCCAGCCTCGATTGTTACAAGAATTGAGTAACCATTATGGAGCTTTGCGTTGCTTGAATGTTATTGTTATCAGTGATGCATTCACTCTGAACTGATGGCTGAGTCATTATCAGTAGAATCTATTTAGAAGCTTGTTTCGCCTGCCCCAGATTCAATTAG

Ace file of the UniGene sp_v1.1_unigene17964

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxiredoxin, putative (EC:1.11.1.15)	-	-	7.0e-23	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	peroxiredoxin-like protein	-	-	1.19116e-22	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	1.19116e-22	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Phenylalanine metabolism	00360		1.19116e-22	92%
Blast2go	Methane metabolism	00680		1.19116e-22	92%
Blast2go	Phenylpropanoid biosynthesis	00940		1.19116e-22	92%
Blast2go	Biosynthesis of phenylpropanoids	01061		1.19116e-22	92%
Blast2go	Metabolic pathways	01100		1.19116e-22	92%
Blast2go	Biosynthesis of secondary metabolites	01110		1.19116e-22	92%
Blast2go	Peroxiredoxin.	EC:1.11.1.15	-	1.19116e-22	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		1.19116e-22	92%
Blast2go	Metabolic pathways	01100		1.19116e-22	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.19116e-22	92%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	1.19116e-22	92%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.19116e-22	92%
Blast2go	protein binding	GO:0005515	Molecular Function	1.19116e-22	92%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	1.19116e-22	92%
Blast2go	peroxiredoxin activity	GO:0051920	Molecular Function	1.19116e-22	92%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.19116e-22	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.19116e-22	92%
Blast2go	thylakoid	GO:0009579	Cellular Component	1.19116e-22	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin fold	IPR012335	-	1.19116e-22	92%
Blast2go	Thioredoxin-like fold	IPR012336	-	1.19116e-22	92%
Blast2go	Redoxin	IPR013740	-	1.19116e-22	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN26

Fln msg: your sequence is shorter than subject: 69 - 239

Fln protein: KVLLLSDGNGQFTKAMGVSVDLSNKPVGLGVRSRRYSLLADNGVVKVLNLEEGGSFTVSGADDILKAL*

Protein Length: 70

Fln nts: GCAAAGTTCTGCTGCTTTCTGATGGCAACGGGCAATTCACGAAGGCCATGGGGGTTTCCGTCGATTTAAGCAATAAGCCGGTGGGTTTAGGTGTGCGATCGCGCAGGTACTCGTTACTGGCGGACAATGGGGTTGTTAAAGTGCTCAATTTAGAGGAAGGCGGGTCGTTTACCGTTAGCGGGGCCGATGATATATTGAAGGCCCTGTGA___GCGTTAGGCTTCAGCGGGTTCTTTTTGCAGGATTATTGTTATCAATGATGGATTCACAGTAAATCGATGACCGATGGTTGAGGTATTATCAACAGGCTTTATTTAGATGCCTGTTTCGCTTGCCCCAGCCTCGATTGTTACAAGAATTGAGTAACCATTATGGAGCTTTGCGTTGCTTGAATGTTATTGTTATCAGTGATGCATTCACTCTGAACTGATGGCTGAGTCATTATCAGTAGAATCTATTTAGAAGCTTGTTTCGCCTGCCCCAGATTCAATTAG

Fln Alignment:

sp_v1.1_unigene17964___KVLLLSDGNGQFTKAMGVSVDLSNKPVGLGVRSRRYSLLADNGVVKVLNLEEGGSFTVSGADDILKAL
A9NN26_______________KVLLLADGIQEFTKALGVTLDLSDKPVGLGVRSRRYALLAEDGVVKVLNLEEGGAFTVSSAEDILKAL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
212	16		83		0.994512
214			16	83	0.994512
215	83		16		0.994512
218		83		16	0.994512
276	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain