SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17961

Length: 1096 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17961

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RJU4_RICCO	-	-	2.0e-08	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	88%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	88%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSI6

Fln msg: your sequence is shorter than subject: 301 - 484

Fln protein: CTTLQKGWTKFNVYNRMPERESNSEIPSVFNSTIRDGLLAYREHMTPAFIAMQGIRKRRSLSAEAAGNGFVACSGHEETGSQISCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQLSGTQDDAHATNGIPAKKRRCECMELREQEVDFIPSAIQEKAVLNGKCSSDGVYFPPVASQESGIQLECCNIDKNSDYSDEKFCDYSTDNMTGNGSSNNSASKVGQPSSWRKSRKEKMKKAIDLFRSIVPEGRSMDTAGVLDMASQYLKSLQLRVERLEANQNDRTLTKP*

Protein Length: 302

Fln nts: TGCACGACTCTGCAAAAGGGTTGGACAAAATTCAATGTCTATAATAGGATGCCCGAGAGAGAAAGCAATTCTGAAATACCTTCGGTATTTAACTCAACTATCCGGGATGGGTTGCTGGCATACAGGGAGCATATGACTCCAGCATTCATAGCCATGCAAGGAATACGAAAGAGGAGGTCGTTGAGTGCAGAGGCTGCTGGTAACGGGTTTGTTGCTTGCTCTGGGCATGAAGAAACTGGAAGCCAAATAAGTTGTAATGGGTCAAGCAGAGGAGGTTATCAAAGTCAATCACACGAAGATACCAGAGATCTTGAAGCTCTATTGGGTTCTGATGAGGAAGAGGATGATAGCACTGGTCACACTCCAAGTGAAGCCATAACAAACGACCAGCTGAGCGGTACGCAAGACGATGCACATGCTACCAATGGAATTCCAGCTAAGAAGAGGCGATGTGAATGTATGGAACTCAGAGAACAGGAGGTTGACTTTATTCCCTCTGCTATCCAAGAGAAGGCAGTTTTGAATGGGAAATGTAGTTCAGATGGTGTTTACTTTCCACCCGTAGCAAGTCAGGAATCAGGTATTCAACTCGAATGCTGTAACATTGACAAGAATTCTGACTATAGTGATGAGAAGTTCTGTGATTATAGTACTGACAACATGACAGGAAACGGGAGCTCAAATAACAGTGCCTCTAAAGTGGGGCAACCAAGCTCATGGAGGAAGTCGAGGAAAGAGAAAATGAAAAAAGCTATAGATCTGTTTAGAAGTATTGTGCCCGAAGGACGTTCCATGGATACTGCAGGTGTTCTTGATATGGCCTCCCAGTACTTGAAATCCCTTCAACTAAGAGTCGAAAGGCTGGAAGCCAATCAGAATGATAGAACTTTGACGAAGCCTTGA___GCTCCCTGATTGATGTGGTAAATCACATAACTTCTAAGTTTTAAGCTATGTCTACAATCTCTGTTGGACACCAAAAACGTTTTCTTTTCCAGTTTGGCTGACTGTTTTTGCCGAAATAACTAGTGGAATGTGCCAAAAATAGCTGATTTGCTAAAAATATGAAGGATCAAAGCTTAAACATGTTTGTGTTTTG

Fln Alignment:

sp_v1.1_unigene17961___KGWTKFNVYNRMPERESNSEIPSVFNSTIRD-GLLAYREHMTPAFIAMQGIRKRRSLSAEAAGNGFVACSGHEETGSQISCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQLSGTQDDAHATNGIPAKKRRCECMELREQEVDFIPSAIQEKAVLNGKCSSDGVYFPPVASQESGIQLECCNIDKNSDYSDEKFCDYSTDNMTGNGSSNNSASKVGQPSSWRKSRKEKMKKAIDLFRSIVPEGRSMDTAGVLDMASQYLKSLQLRVERLEANQNDRTLTKP
C0PSI6_______________KGLDKINAHNRVPQKESISQIPSVYNSTDRGTGLLAYREHMAPAFTALQGIRKRRWLSAEAAGNGFVACSKQEETGSQMSCNGSSRGGYQSQSHEDTRDLEALLGSDEEEDDSTGHTPSEAITNDQQSGTQDEAHISNGIPTKKRRCECMEFGEQEVDFIPSAIQETAVLNGKCSSDGVCFPPVASQESGIQLECCNTVKDSDYRDEQFCDYSTDNMTGNGSSNNSASKVGQPSSRRKLRKEKVKKAINLLRSIVPEGHSMDTAAVLEVASQHLKSLQLKLERLEANQNDKTLSKP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
164	75		25		0.996473
196		75		25	0.996473
227		38		61	1.0
743	11		88		0.923564
744	88		11		0.923564
776			70	30	1.0
780		10	90		0.90298
1070		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain