SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17956

Length: 953 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17956

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	86%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	86%
Blast2go	sucrose synthase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	82%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	82%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sucrose synthase	IPR000368	-	0.0	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Distance to subject end: 544 aas, your sequence is shorter than subject: 309 - 833

Fln protein: MERRPHVLVFPFPAQGHMNVTLARPRPHSRHPWPLPNGAHNSSKPIPLESSFAESFIRGPSDSASHHVLDGLAELTGENAEGQKLRDGPFGDVLRSTQEAIILPPWVVLAVRPRPGVWEYVRVNVDELAVEQLSVAEYLEFKEHLVNGSDKDNYVLELDLEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFHDKESMQPLLDFLRAHNYRGQKLMLNERIQSLAKLRSSLVKAEENLSKLPKDTPYTEFEHRLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHG

Protein Length: 310

Fln nts: TGCCACTGTACTGGAATCGCAAAC_-_ATGGAGAGGAGACCTCACGTTCTTGTATTCCCATTTCCAGCACAGGGCCACATGAATGTCACCCTTGCTCGACCTCGCCCACACTCTCGCCACCCATGGCCTCTCCCTAACGGTGCTCACAACTCCTCAAAACCAATACCTCTTGAATCCTCTTTTGCAGAGAGCTTCATCAGAGGGCCTTCAGATTCAGCCTCTCATCATGTATTGGATGGACTAGCAGAATTAACAGGAGAGAATGCTGAAGGCCAAAAGCTTCGAGATGGGCCATTTGGAGATGTGTTGAGGTCCACACAGGAAGCCATCATTCTTCCACCATGGGTTGTTCTTGCAGTACGTCCAAGGCCTGGTGTGTGGGAATATGTTCGTGTCAATGTTGATGAACTTGCTGTCGAACAGCTTTCTGTAGCTGAGTATTTGGAATTCAAGGAACACCTTGTAAATGGAAGTGACAAGGATAACTATGTATTGGAGTTAGACCTTGAGCCCTTCAATGCATCCTTTCCTCGCCCAACACGGCCATCTTCCATTGGTAGCGGAGTTCAATTTTTGAACCGACATTTGTCCTCAAGACTATTCCATGATAAAGAAAGCATGCAGCCCTTGCTGGATTTCCTAAGAGCACACAACTACCGAGGCCAGAAGCTGATGCTGAATGAGAGGATACAGAGTTTGGCCAAGCTACGATCATCCTTGGTAAAGGCAGAGGAAAATCTTAGCAAGCTCCCAAAGGACACACCATATACAGAGTTCGAACACAGATTACAAGAAATGGGATTGGAAAAAGGATGGGGAGAGAATGCAGAACATGTCTTGGATACGATTCATTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCAAATTTAGAAACTTTTCTAGGAAGGGTTCCTATGGTCTTTAATGTTGTGATTCTTTCACCTCATGGTTA

Fln Alignment:

sp_v1.1_unigene17956___HHVLDGLAELTGENAEGQKLRDGPFGDVLRSTQEAIILPPWVVLAVRPRPGVWEYVRVNVDELAVEQLSVAEYLEFKEHLVNGSDKDNYVLELDLEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFHDKESMQPLLDFLRAHNYRGQKLMLNERIQSLAKLRSSLVKAEENLSKLPKDTPYTEFEHRLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHG
A6N837_______________HQLLDGLEEVIGKNVELESLRHGLFGEVLRSTQEAIVLPPWIALAVRPRPGVWEYVRVNVDELAAEQLSVAEYLEFKEHLVNGSVKDDYVLELDFEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFRDKESMQPLLDFLRAHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
66	66		33		1.0
67		66		33	1.0
68	66	33			1.0
70			66	33	1.0
72	33	66			1.0
76	66			33	1.0
79	16		83		0.994512
80	50	33		16	1.0
87		16		83	0.994512
88		33		16	1.0
89	33			66	1.0
220		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain