SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17935

Length: 451 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17935
ATGGGGCCGGGATTTATAATTATAACATCGTCACTGAAAGGCCGCAGTCGATGCGAGGGGTCGATTCTGAACTGAAGGTATACAAAGGCCAAGAATAACAAAGTGGGAGCGCCGTCGGTGCTCCGTCAAAGCCGGCGGTCATGTCCACCCTCGAAATCGAAGCTCGCGATGTTATAAAAATTGTGCTACAATTTTGCAAAGAGAATTCTTTGCACCAAACATTTCAAACACTGCAAAACGAATGCCAGGTTTCTCTTAATACTGTGGACAGCCTTGAAACATTTGTAGCAGATATCAATAGTGGAAGATGGGATGTGATACTGCCACAAGTTGCACAGCTTAAGCTTCCTAGAAAGAAGCTAGAAGACTTGTATGAACAGATTGTATTGGAGATGATTGAACTTCGAGAATTAGACACTGCAAGAGCTATTCTAAGGCAGACTCAAGCAAT

Ace file of the UniGene sp_v1.1_unigene17935

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative (EC:2.7.11.7); K13111 WD40 repeat-containing protein SMU1	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	97%
Blast2go	wd40 repeat-containing protein smu1	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	92%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	92%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LisH dimerisation motif	IPR006594	-	0.0	92%
Blast2go	CTLH, C-terminal LisH motif	IPR006595	-	0.0	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SHM1

Fln msg: Distance to subject end: 409 aas, your sequence is shorter than subject: 103 - 514

Fln protein: MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSLETFVADINSGRWDVILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQA

Protein Length: 104

Fln nts: ATGGGGCCGGGATTTATAATTATAACATCGTCACTGAAAGGCCGCAGTCGATGCGAGGGGTCGATTCTGAACTGAAGGTATACAAAGGCCAAGAATAACAAAGTGGGAGCGCCGTCGGTGCTCCGTCAAAGCCGGCGGTC_-_ATGTCCACCCTCGAAATCGAAGCTCGCGATGTTATAAAAATTGTGCTACAATTTTGCAAAGAGAATTCTTTGCACCAAACATTTCAAACACTGCAAAACGAATGCCAGGTTTCTCTTAATACTGTGGACAGCCTTGAAACATTTGTAGCAGATATCAATAGTGGAAGATGGGATGTGATACTGCCACAAGTTGCACAGCTTAAGCTTCCTAGAAAGAAGCTAGAAGACTTGTATGAACAGATTGTATTGGAGATGATTGAACTTCGAGAATTAGACACTGCAAGAGCTATTCTAAGGCAGACTCAAGCAAT

Fln Alignment:

sp_v1.1_unigene17935___STLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSLETFVADINSGRWDVILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQA
D7SHM1_______________STLEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSLETFIADINSGRWDAILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
43	25	75			0.996473
91		28	71		1.0
104	11		88		0.923564
105		11		88	0.923564
106	33		66		1.0
109	88		11		0.923564
303		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain